View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11240_low_13 (Length: 375)
Name: NF11240_low_13
Description: NF11240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11240_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 336
Target Start/End: Complemental strand, 43584391 - 43584044
Alignment:
| Q |
7 |
agaaatggttatccttaaattgtaaagggacactttaaattaaaagggtggataaaggtacatgtactatagagttttgaaagaaaaaagagggaatg-- |
104 |
Q |
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| T |
43584391 |
agaaatggttatccttaaattgtaaagggacactttaaatgaaaagggtggataaaggtacatgtactatagagttttgaaagaaaaaagagggaatgta |
43584292 |
T |
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| Q |
105 |
-------------------catatccaaacatgtatatttctggcaagcttagctgtcactggcgtgattcattagaagtgtccagaaacaaataaaata |
185 |
Q |
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| T |
43584291 |
gttatttggtatagacatgcatatccaaacatgtatatttctggcaaccttagctgtcactggcgtgattcattagaagtgtccagaaacaaataaaata |
43584192 |
T |
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| Q |
186 |
ttctttcatgtgaattgtagggagtggtaaagaggtgctgtttggtggggtagaatgtgaaggaaataaccataatcataataaaagtaaaacaaacaag |
285 |
Q |
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| T |
43584191 |
ttctttcatgtgaattgtagggagtggtaaagaggtgctgtttggtggggtagaatgtgaaggaaataaccataatc---ataaaagtaaaacaaacaag |
43584095 |
T |
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| Q |
286 |
tattacttggaggggatatgaatagctatggaccacaaacagcaccggcca |
336 |
Q |
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| T |
43584094 |
tattacttggaggggatatgaatagctatggaccacaaacagcaccggcca |
43584044 |
T |
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