View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11240_low_14 (Length: 364)

Name: NF11240_low_14
Description: NF11240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11240_low_14
NF11240_low_14
[»] chr2 (26 HSPs)
chr2 (17-343)||(35412278-35412594)
chr2 (275-347)||(16625857-16625929)
chr2 (266-344)||(4003352-4003430)
chr2 (266-347)||(1364757-1364838)
chr2 (266-347)||(6656042-6656123)
chr2 (266-347)||(13018554-13018635)
chr2 (266-353)||(15555416-15555502)
chr2 (266-347)||(11514968-11515049)
chr2 (274-347)||(37194199-37194272)
chr2 (275-343)||(16519169-16519236)
chr2 (299-347)||(34757562-34757610)
chr2 (276-343)||(5322199-5322265)
chr2 (278-341)||(26599331-26599394)
chr2 (266-339)||(30072492-30072565)
chr2 (298-347)||(43572620-43572668)
chr2 (266-345)||(21626048-21626126)
chr2 (275-353)||(43190609-43190686)
chr2 (275-348)||(30523180-30523253)
chr2 (266-347)||(31082740-31082820)
chr2 (266-347)||(40211928-40212008)
chr2 (275-347)||(26905737-26905809)
chr2 (275-343)||(32761355-32761422)
chr2 (299-342)||(5321809-5321852)
chr2 (275-344)||(21834874-21834943)
chr2 (315-343)||(3737305-3737333)
chr2 (317-345)||(37774719-37774747)
[»] chr7 (24 HSPs)
chr7 (25-202)||(48992014-48992200)
chr7 (266-347)||(38505410-38505491)
chr7 (274-347)||(4058215-4058288)
chr7 (266-347)||(15749025-15749106)
chr7 (274-345)||(16805645-16805716)
chr7 (275-347)||(45940476-45940548)
chr7 (275-353)||(46442642-46442720)
chr7 (299-344)||(6746648-6746693)
chr7 (275-344)||(42113037-42113105)
chr7 (266-345)||(1277863-1277941)
chr7 (278-345)||(43741284-43741350)
chr7 (274-348)||(30081311-30081384)
chr7 (277-343)||(38137876-38137942)
chr7 (305-344)||(17884270-17884310)
chr7 (304-343)||(20513274-20513313)
chr7 (308-347)||(23466073-23466112)
chr7 (275-353)||(30080905-30080983)
chr7 (275-353)||(38233805-38233883)
chr7 (319-353)||(42267076-42267110)
chr7 (267-343)||(4788081-4788154)
chr7 (317-345)||(6635809-6635837)
chr7 (275-347)||(23551592-23551663)
chr7 (299-347)||(33872187-33872234)
chr7 (206-234)||(46611703-46611731)
[»] chr4 (23 HSPs)
chr4 (274-347)||(30198847-30198920)
chr4 (274-347)||(12708910-12708983)
chr4 (274-347)||(29114309-29114382)
chr4 (275-347)||(35959129-35959201)
chr4 (275-347)||(46177003-46177075)
chr4 (275-347)||(52636694-52636766)
chr4 (274-353)||(38136904-38136983)
chr4 (275-347)||(368004-368074)
chr4 (274-343)||(28175544-28175613)
chr4 (275-347)||(24662789-24662861)
chr4 (266-347)||(16318541-16318622)
chr4 (266-347)||(33500444-33500525)
chr4 (306-344)||(44076568-44076606)
chr4 (275-342)||(45022800-45022867)
chr4 (311-353)||(22891357-22891399)
chr4 (311-353)||(22943021-22943063)
chr4 (274-347)||(47063626-47063698)
chr4 (204-253)||(52636631-52636680)
chr4 (275-343)||(54205769-54205840)
chr4 (275-347)||(21081283-21081355)
chr4 (304-340)||(27938868-27938904)
chr4 (266-346)||(45971486-45971565)
chr4 (266-342)||(51153618-51153693)
[»] chr8 (16 HSPs)
chr8 (275-347)||(39193864-39193936)
chr8 (266-347)||(21173934-21174014)
chr8 (274-347)||(23932634-23932706)
chr8 (275-347)||(79689-79761)
chr8 (266-353)||(26772712-26772798)
chr8 (274-334)||(36837563-36837622)
chr8 (275-347)||(1840274-1840353)
chr8 (289-353)||(4166712-4166776)
chr8 (279-353)||(5858333-5858406)
chr8 (313-343)||(13258470-13258500)
chr8 (274-347)||(1839896-1839968)
chr8 (204-237)||(28416349-28416382)
chr8 (310-343)||(31149881-31149914)
chr8 (266-343)||(43239594-43239671)
chr8 (307-343)||(2457945-2457981)
chr8 (275-343)||(35376708-35376776)
[»] scaffold0128 (1 HSPs)
scaffold0128 (274-347)||(26311-26384)
[»] chr3 (27 HSPs)
chr3 (266-347)||(3537132-3537213)
chr3 (275-347)||(29623171-29623242)
chr3 (275-347)||(517707-517777)
chr3 (274-347)||(33944716-33944788)
chr3 (274-347)||(38639521-38639594)
chr3 (275-347)||(37674216-37674288)
chr3 (266-347)||(33909025-33909105)
chr3 (274-347)||(48908950-48909022)
chr3 (293-347)||(40118960-40119014)
chr3 (266-343)||(5939861-5939938)
chr3 (266-347)||(44400634-44400714)
chr3 (266-347)||(53664675-53664756)
chr3 (277-347)||(50948140-50948211)
chr3 (274-347)||(25754178-25754249)
chr3 (278-344)||(30995807-30995872)
chr3 (275-343)||(39478039-39478108)
chr3 (279-347)||(27197190-27197257)
chr3 (302-353)||(1339968-1340019)
chr3 (304-339)||(49183658-49183693)
chr3 (309-347)||(35283054-35283092)
chr3 (266-328)||(49683097-49683158)
chr3 (204-250)||(53664424-53664470)
chr3 (267-344)||(22225292-22225368)
chr3 (278-347)||(45571019-45571088)
chr3 (317-349)||(43263698-43263730)
chr3 (275-343)||(49855888-49855955)
chr3 (280-344)||(54126220-54126284)
[»] chr1 (35 HSPs)
chr1 (266-347)||(5584429-5584510)
chr1 (266-347)||(27255133-27255214)
chr1 (275-347)||(7915446-7915518)
chr1 (275-347)||(17760551-17760623)
chr1 (274-347)||(29092019-29092091)
chr1 (266-347)||(36269667-36269748)
chr1 (274-347)||(37649692-37649765)
chr1 (275-343)||(50586981-50587048)
chr1 (274-353)||(41817369-41817447)
chr1 (274-347)||(5970507-5970579)
chr1 (279-347)||(33854914-33854982)
chr1 (279-347)||(33925940-33926008)
chr1 (274-345)||(34154406-34154477)
chr1 (274-340)||(47742463-47742529)
chr1 (275-335)||(38858094-38858153)
chr1 (278-344)||(52068216-52068285)
chr1 (305-347)||(33324597-33324639)
chr1 (278-343)||(2494043-2494108)
chr1 (274-347)||(17556600-17556672)
chr1 (299-344)||(32511688-32511733)
chr1 (274-347)||(43036389-43036460)
chr1 (274-347)||(46001499-46001571)
chr1 (275-343)||(27102904-27102972)
chr1 (275-347)||(32672547-32672619)
chr1 (266-346)||(36886794-36886873)
chr1 (304-347)||(69696-69739)
chr1 (204-251)||(26940797-26940844)
chr1 (304-347)||(39887002-39887045)
chr1 (275-347)||(41432841-41432911)
chr1 (274-347)||(49103028-49103100)
chr1 (274-345)||(50097561-50097631)
chr1 (204-252)||(35619332-35619379)
chr1 (299-343)||(37955132-37955176)
chr1 (319-347)||(42333622-42333650)
chr1 (275-347)||(52073524-52073595)
[»] chr6 (7 HSPs)
chr6 (266-347)||(1567205-1567286)
chr6 (274-347)||(32719452-32719524)
chr6 (266-347)||(33590403-33590484)
chr6 (275-334)||(26713796-26713855)
chr6 (266-347)||(11180235-11180315)
chr6 (299-344)||(20820609-20820654)
chr6 (266-344)||(28551964-28552042)
[»] chr5 (18 HSPs)
chr5 (274-347)||(10842977-10843049)
chr5 (266-347)||(35683549-35683630)
chr5 (266-347)||(39649495-39649576)
chr5 (275-347)||(5772796-5772867)
chr5 (278-347)||(21916369-21916438)
chr5 (299-347)||(38568443-38568491)
chr5 (281-344)||(6044475-6044538)
chr5 (315-353)||(22103490-22103528)
chr5 (301-343)||(37908960-37909002)
chr5 (266-343)||(10437910-10437987)
chr5 (266-347)||(14570116-14570197)
chr5 (299-344)||(43496939-43496983)
chr5 (307-347)||(10955766-10955806)
chr5 (275-313)||(35704643-35704681)
chr5 (315-347)||(1978006-1978038)
chr5 (275-343)||(6491403-6491470)
chr5 (299-343)||(13569321-13569364)
chr5 (299-343)||(32824620-32824663)
[»] scaffold0136 (1 HSPs)
scaffold0136 (266-347)||(2099-2179)
[»] scaffold0248 (1 HSPs)
scaffold0248 (275-347)||(272-343)
[»] scaffold0263 (1 HSPs)
scaffold0263 (297-347)||(12325-12375)
[»] scaffold0002 (1 HSPs)
scaffold0002 (297-347)||(90951-91001)
[»] scaffold0053 (1 HSPs)
scaffold0053 (266-353)||(29169-29255)
[»] scaffold0051 (4 HSPs)
scaffold0051 (280-347)||(766-833)
scaffold0051 (280-347)||(3643-3710)
scaffold0051 (279-347)||(6833-6901)
scaffold0051 (279-347)||(7816-7884)
[»] scaffold0388 (1 HSPs)
scaffold0388 (275-347)||(7003-7075)
[»] scaffold0036 (1 HSPs)
scaffold0036 (275-343)||(82729-82797)
[»] scaffold0031 (1 HSPs)
scaffold0031 (301-344)||(93585-93628)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 343
Target Start/End: Complemental strand, 35412594 - 35412278
Alignment:
Q  17 caaagtggaatcgatcaatcaatcaatcctggcttcggatatatggagatgcctttttccagcacgaagaaacagttggcgaattctaccttcttctcca 116  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35412594 caaagtggaatcgatcaatc----aatcctggcttcggatatatggagatgcctttttccagcatgaagaaacagttggcgaattctaccttcttctcca 35412499  T
Q  117 atactctcctcctcaagaataatgcaaaacatgaatctcttcaagttgtgttccgctctcacagttttaggttacttcatgattctattaggttttgttt 216  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||| ||||| |||||||    
T  35412498 atactctcctcctcaagaataatgaaaaacatgaatctcttcaagatgtgttccactctcagagttttaggttacttcatgattctcttaggctttgttt 35412399  T
Q  217 gcaagtttggaggggaaggaatggaaggattttggaagnnnnnnnnnnnggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggg 316  Q
    ||||||||| || ||||| |||||||||||||||| |            |||||||||||||||||||||||||||||||| | | ||||||||||||||    
T  35412398 gcaagtttgaagaggaagcaatggaaggattttggga------aaaaaaggaatgattaagtggaaaaaatagaggacattggaaaaggagggctttggg 35412305  T
Q  317 gggttaatttttcttcataatacaaaa 343  Q
    |||||||||||||||||||||||||||    
T  35412304 gggttaatttttcttcataatacaaaa 35412278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 16625929 - 16625857
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  16625929 aagtggaagaaatagagtacattgggaggggagggctttggggggttaatttttcttcatgatacaaaaccct 16625857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 266 - 344
Target Start/End: Original strand, 4003352 - 4003430
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaac 344  Q
    |||||||  |||||||| |||||||||| | | |||| |||||||||||||||||||||||||||||||||||||||||    
T  4003352 ggaatgagcaagtggaagaaatagaggaaaatgggaggggagggctttggggggttaatttttcttcataatacaaaac 4003430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 1364757 - 1364838
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||  |||||||| ||||||| || | | ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1364757 ggaatgagcaagtggaagaaatagaagaaaatgggagaggagggctttggggggttaacttttcttcataatacaaaaccct 1364838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 6656042 - 6656123
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||  |||||||| ||||||| || | | ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6656042 ggaatgagcaagtggaagaaatagaagaaaatgggagaggagggctttggggggttaacttttcttcataatacaaaaccct 6656123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 266 - 347
Target Start/End: Complemental strand, 13018635 - 13018554
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||| ||||||||| |||| ||||| | | ||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  13018635 ggaatgagtaagtggaagaaatggaggaaaatgggagaggagggctttggggagttaacttttcttcataatacaaaaccct 13018554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 266 - 353
Target Start/End: Complemental strand, 15555502 - 15555416
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaacccttatcat 353  Q
    |||||||  |||||||| ||||||| || | | |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  15555502 ggaatgagcaagtggaagaaatagaagaaaatgggagaggagggctttggggg-ttaatttttcttcataatacaaaacccttctcat 15555416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 11514968 - 11515049
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||  |||||||| ||||||| || | | ||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  11514968 ggaatgagcaagtggaagaaatagaagaaaatgggagaggagagctttggggggttaacttttcttcataatacaaaaccct 11515049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 37194199 - 37194272
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||| |||||||||| | | | ||| ||||||||||||||||||| |||||||||||||||||||||||    
T  37194199 taagtggaagaaatagaggaaaatggaagacgagggctttggggggttaacttttcttcataatacaaaaccct 37194272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 275 - 343
Target Start/End: Complemental strand, 16519236 - 16519169
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaa 343  Q
    |||||||| |||||||| ||||| |||| |||||||||||| ||||| |||||||||||||||||||||    
T  16519236 aagtggaagaaatagagtacatt-ggaggggagggctttggtgggttgatttttcttcataatacaaaa 16519169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 34757562 - 34757610
Alignment:
Q  299 ggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||    
T  34757562 ggagaggagggctttggggggttaacctttcttcataatacaaaaccct 34757610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 343
Target Start/End: Complemental strand, 5322265 - 5322199
Alignment:
Q  276 agtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaa 343  Q
    ||||||||| |||||||||||| |||| |||| ||||| ||||||| |||||||||||||||||||||    
T  5322265 agtggaaaagatagaggacattgggaggggagagcttt-gggggttcatttttcttcataatacaaaa 5322199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 278 - 341
Target Start/End: Complemental strand, 26599394 - 26599331
Alignment:
Q  278 tggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaa 341  Q
    ||||||||||||||  |||| |||| | |||||||||||||||| |||||||||||||||||||    
T  26599394 tggaaaaaatagagagcattgggagggaagggctttggggggttcatttttcttcataatacaa 26599331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 339
Target Start/End: Complemental strand, 30072565 - 30072492
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatac 339  Q
    |||||||  |||||||| |||||||||| | | |||| ||||||||||| |||||||| |||||||||||||||    
T  30072565 ggaatgagcaagtggaagaaatagaggaaaatgggaggggagggctttgaggggttaacttttcttcataatac 30072492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 347
Target Start/End: Complemental strand, 43572668 - 43572620
Alignment:
Q  298 aggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  43572668 aggagaggagggctttggggg-ttaacttttcttcataatacaaaaccct 43572620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 345
Target Start/End: Original strand, 21626048 - 21626126
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaacc 345  Q
    |||||||  |||| ||| |||||||||| | | ||| ||||| ||||||||||||||| |||||||||||||||||||||    
T  21626048 ggaatgagcaagtagaagaaatagaggaaaat-ggaaaggagtgctttggggggttaacttttcttcataatacaaaacc 21626126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 353
Target Start/End: Complemental strand, 43190686 - 43190609
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaacccttatcat 353  Q
    |||||||| |||||||||| | | |||| |||||| |||| |||||||| |||||||||||||||||||| || |||||    
T  43190686 aagtggaagaaatagaggaaaatgggaggggaggg-tttgaggggttaacttttcttcataatacaaaactctcatcat 43190609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 348
Target Start/End: Original strand, 30523180 - 30523253
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccctt 348  Q
    |||||||| |||||||||||| | |||  |||||  ||||| ||||||| ||||||||||||||||||| ||||    
T  30523180 aagtggaacaaatagaggacaatgggaagggaggattttggtgggttaaattttcttcataatacaaaatcctt 30523253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 31082740 - 31082820
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||  |||||||| |||||||||| | | |||| |||||||||| ||||||||| |||||||| |||||| |||||||    
T  31082740 ggaatgagcaagtggaagaaatagaggaaaatgggaggggagggcttt-gggggttaacttttcttcgtaatactaaaccct 31082820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 40211928 - 40212008
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||| ||||||||||| |||||||||| | | |||||||||||| | ||  |||||  |||||||||||||||||||||||    
T  40211928 ggaataattaagtggaagaaatagaggaaaatgggagaggagggc-tcggatggttatattttcttcataatacaaaaccct 40212008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 26905737 - 26905809
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||| ||||| |||| | | ||||||||||  |||| |||||||| |||||||||| ||||||||||||    
T  26905737 aagtggaagaaataaaggaaaatgggagaggaggattttgaggggttaacttttcttcatgatacaaaaccct 26905809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 343
Target Start/End: Complemental strand, 32761422 - 32761355
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaa 343  Q
    |||||||| |||||||||||||| || |  |||||||||| ||| || |||||||||||||||||||||    
T  32761422 aagtggaataaatagaggacattgggggcagagggctttgtggg-ttcatttttcttcataatacaaaa 32761355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 5321852 - 5321809
Alignment:
Q  299 ggagaggagggctttggggggttaatttttcttcataatacaaa 342  Q
    |||| |||||||||||||||||| | ||||||||||||||||||    
T  5321852 ggaggggagggctttggggggtttagttttcttcataatacaaa 5321809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 344
Target Start/End: Original strand, 21834874 - 21834943
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaac 344  Q
    |||||||| ||| |||||||||  |||  | |||||||||| || ||||||||||||||||||| |||||    
T  21834874 aagtggaagaaacagaggacatcgggacggaagggctttggaggattaatttttcttcataatataaaac 21834943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 343
Target Start/End: Complemental strand, 3737333 - 3737305
Alignment:
Q  315 gggggttaatttttcttcataatacaaaa 343  Q
    |||||||||||||||||||||||||||||    
T  3737333 gggggttaatttttcttcataatacaaaa 3737305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 345
Target Start/End: Original strand, 37774719 - 37774747
Alignment:
Q  317 gggttaatttttcttcataatacaaaacc 345  Q
    |||||||||||||||||||||||||||||    
T  37774719 gggttaatttttcttcataatacaaaacc 37774747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 48992014 - 48992200
Alignment:
Q  25 aatcgatcaatcaatcaatcctggcttcggatatatggagatgcctttttcc---agcacgaagaaacagttggcgaattctaccttcttctccaatact 121  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||| ||   |||||||||||||||| |||||||||| |||||||   ||||| |    
T  48992014 aatcgatcaatcaatcaaccctggcttcggatatatggagacgccttttcccaatagcacgaagaaacagtaggcgaattcttccttctt---caatatt 48992110  T
Q  122 ctcctcctcaaga---------ataatgcaaaacatgaatctcttcaagttgtgttccgctctcacagttttaggttacttcatgattct 202  Q
    ||| ||   || |         ||||||||||||||||||||||| ||  ||||||||||||||| |||| |||||||||||||||||||    
T  48992111 ctcttcaagaataagaataatgataatgcaaaacatgaatctctttaaactgtgttccgctctcagagttctaggttacttcatgattct 48992200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 266 - 347
Target Start/End: Complemental strand, 38505491 - 38505410
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||  |||||||| |||||||||| | | |||| |||||||||||||||||||| |||||||||||||||||||||||    
T  38505491 ggaatgagcaagtggaagaaatagaggaaaatgggaggggagggctttggggggttaacttttcttcataatacaaaaccct 38505410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 4058288 - 4058215
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||| |||||||||| | | | ||| ||||||||||||||||||| |||||||||||||||||||||||    
T  4058288 taagtggaagaaatagaggaaaatggaagatgagggctttggggggttaacttttcttcataatacaaaaccct 4058215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 266 - 347
Target Start/End: Complemental strand, 15749106 - 15749025
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||  |||||||| ||||||| || | | ||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  15749106 ggaatgagcaagtggaagaaatagaagaaaatgggagaggagagctttggggggttaacttttcttcataatacaaaaccct 15749025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 274 - 345
Target Start/End: Complemental strand, 16805716 - 16805645
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaacc 345  Q
    ||||||||| ||| |||||| | | |||||||||||||||||||| |||| |||||||||||||||||||||    
T  16805716 taagtggaagaaagagaggaaaatgggagaggagggctttgggggtttaacttttcttcataatacaaaacc 16805645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 45940548 - 45940476
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||| ||||||| || | | ||||| ||||||||| ||||||||| |||||||||||||||||||||||    
T  45940548 aagtggaagaaatagaagaaaatgggagatgagggctttagggggttaacttttcttcataatacaaaaccct 45940476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 275 - 353
Target Start/End: Original strand, 46442642 - 46442720
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaacccttatcat 353  Q
    |||||| | |||||||||| | | |||| ||||||||| |||||||||| ||||||||||||||||||| ||| |||||    
T  46442642 aagtgggagaaatagaggaaaatgggaggggagggcttcggggggttaacttttcttcataatacaaaatcctcatcat 46442720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 6746693 - 6746648
Alignment:
Q  299 ggagaggagggctttggggggttaatttttcttcataatacaaaac 344  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||    
T  6746693 ggaggggagggctttggggggttaatttttctttataatacaaaac 6746648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 344
Target Start/End: Complemental strand, 42113105 - 42113037
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaac 344  Q
    |||||||| ||||||||  |||| ||||||||||  ||||||||||||||||||||||||||||| ||||    
T  42113105 aagtggaagaaatagagtccattgggagaggaggt-tttggggggttaatttttcttcataatactaaac 42113037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 345
Target Start/End: Original strand, 1277863 - 1277941
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaacc 345  Q
    |||||||  ||||||||||||||||||||||| |||| |  ||||||||||||| | ||||||||||| |||| ||||||    
T  1277863 ggaatgagaaagtggaaaaaatagaggacattgggag-gaggggctttggggggcttatttttcttcaaaatataaaacc 1277941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 345
Target Start/End: Original strand, 43741284 - 43741350
Alignment:
Q  278 tggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaacc 345  Q
    ||||| ||||||| ||||||||||| | ||||||||| ||| ||||||||| ||||||||||||||||    
T  43741284 tggaataaatagatgacattaggagggaagggctttgtggg-ttaattttttttcataatacaaaacc 43741350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 348
Target Start/End: Original strand, 30081311 - 30081384
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccctt 348  Q
    ||||||||||||||||||||||||||||| | |||| |||  |||| | ||||||||||| |||| |||||||||    
T  30081311 taagtggaaaaaatagaggacattaggag-gaagggtttttaggggcttatttttcttcaaaataaaaaaccctt 30081384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 343
Target Start/End: Original strand, 38137876 - 38137942
Alignment:
Q  277 gtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaa 343  Q
    |||||| |||| ||||||||| |||| ||||| |||| || |||| |||||||||||||||||||||    
T  38137876 gtggaagaaatggaggacattgggaggggaggactttaggaggttcatttttcttcataatacaaaa 38137942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 344
Target Start/End: Complemental strand, 17884310 - 17884270
Alignment:
Q  305 gagggctttgggggg-ttaatttttcttcataatacaaaac 344  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  17884310 gagggctttgggggggttaatttttcttcataatacaaaac 17884270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 343
Target Start/End: Original strand, 20513274 - 20513313
Alignment:
Q  304 ggagggctttggggggttaatttttcttcataatacaaaa 343  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  20513274 ggagggctttggggggtttagttttcttcataatacaaaa 20513313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 347
Target Start/End: Complemental strand, 23466112 - 23466073
Alignment:
Q  308 ggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  23466112 ggctttggggggttcatttttctttataatacaaaaccct 23466073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 353
Target Start/End: Original strand, 30080905 - 30080983
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaacccttatcat 353  Q
    |||||||| |||||||||| | | |||| |||||| ||   | |||||| ||||||||||||||||||||||| |||||    
T  30080905 aagtggaagaaatagaggaaaatgggaggggagggtttgcagaggttaacttttcttcataatacaaaaccctcatcat 30080983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 353
Target Start/End: Complemental strand, 38233883 - 38233805
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaacccttatcat 353  Q
    |||| |||||||||||| ||||| | |   |||||||||||  |||||||||||||| ||| |||||||||||| ||||    
T  38233883 aagtagaaaaaatagagtacattggaatgagagggctttggaaggttaatttttcttgatattacaaaacccttctcat 38233805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 42267110 - 42267076
Alignment:
Q  319 gttaatttttcttcataatacaaaacccttatcat 353  Q
    |||||||||||||||||||||||||| ||||||||    
T  42267110 gttaatttttcttcataatacaaaactcttatcat 42267076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 343
Target Start/End: Complemental strand, 4788154 - 4788081
Alignment:
Q  267 gaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaa 343  Q
    |||||| ||||||||| ||||||| |||||| ||| |||||| ||||||||| ||| ||||||||||||||| ||||    
T  4788154 gaatgagtaagtggaagaaatagatgacatt-gga-aggaggactttgggggctta-tttttcttcataatataaaa 4788081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 345
Target Start/End: Original strand, 6635809 - 6635837
Alignment:
Q  317 gggttaatttttcttcataatacaaaacc 345  Q
    |||||||||||||||||||||||||||||    
T  6635809 gggttaatttttcttcataatacaaaacc 6635837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 23551592 - 23551663
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||| ||||| |||||||| |||| |||||| |||  ||| ||| ||||||||||||||||||| ||||    
T  23551592 aagtggaagaaataaaggacattgggaggggagggatttaaggg-ttagtttttcttcataatacaaagccct 23551663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 33872234 - 33872187
Alignment:
Q  299 ggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||| ||||||||||||||| |||| ||||||||||||||| |||||||    
T  33872234 ggaggggagggctttggggg-ttaacttttcttcataatactaaaccct 33872187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 234
Target Start/End: Original strand, 46611703 - 46611731
Alignment:
Q  206 aggttttgtttgcaagtttggaggggaag 234  Q
    |||||||||||||||||||||||||||||    
T  46611703 aggttttgtttgcaagtttggaggggaag 46611731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 30198920 - 30198847
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||| |||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30198920 taagtggaagaaatagaggaaaataggagaggagggctttggggggttaacttttcttcataatacaaaaccct 30198847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 12708983 - 12708910
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||| |||||||||| | | ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12708983 taagtggaagaaatagaggaaaatgggagaggagggctttggggggttaacttttcttcataatacaaaaccct 12708910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 29114382 - 29114309
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||| |||||||||| | | ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29114382 taagtggaagaaatagaggaaaatgggagaggagggctttggggggttaacttttcttcataatacaaaaccct 29114309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 35959129 - 35959201
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||| |||||||| |||||  ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  35959129 aagtggaagaaatagagtacattgtgaggggagggctttgggggtttaatttttcttcataatacaaaaccct 35959201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 46177075 - 46177003
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||| |||||||||||||||    
T  46177075 aagtggaagaaatagagtacattgggaggggagggttttggggggttaatttttcttaataatacaaaaccct 46177003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 52636694 - 52636766
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||| |||||||| ||||| | ||| |||||||||||||||||||||||||||||||||| ||||||||    
T  52636694 aagtggaagaaatagagtacattggaagatgagggctttggggggttaatttttcttcataatataaaaccct 52636766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 274 - 353
Target Start/End: Complemental strand, 38136983 - 38136904
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaacccttatcat 353  Q
    ||||||||| |||||||||| | | | ||||||||||||||||||||||| |||| ||||||||||||||||||| ||||    
T  38136983 taagtggaagaaatagaggaaaatggaagaggagggctttggggggttaactttttttcataatacaaaacccttctcat 38136904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 368004 - 368074
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||| |||||||||| | |||||||| ||||||||||||  ||||||||||||||||||||||||||||    
T  368004 aagtggaagaaatagaggaaaataggagagaagggctttgggg--ttaatttttcttcataatacaaaaccct 368074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 274 - 343
Target Start/End: Complemental strand, 28175613 - 28175544
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaa 343  Q
    ||||||||| |||||||||| | | |||||||||||||||||| |||||| |||||||||||||||||||    
T  28175613 taagtggaagaaatagaggaaaatgggagaggagggctttgggaggttaacttttcttcataatacaaaa 28175544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 24662861 - 24662789
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||||||||||| ||||||| ||| | | |||||||||| ||| ||||||||||||| |||||||||||    
T  24662861 aagtggaaaaaatagatgacattaagagggaaaggctttggggcgttcatttttcttcatactacaaaaccct 24662789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 16318541 - 16318622
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||  |||||||| ||||||| || | | |||||||||||||||  |||||||| ||||||||||| |||||||||||    
T  16318541 ggaatgagcaagtggaagaaatagaagaaaatgggagaggagggctttcaggggttaacttttcttcatattacaaaaccct 16318622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 33500444 - 33500525
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||  |||||||| |||||||||| | | |||||||||||||||| || ||||| ||| |||||||| ||||||||||    
T  33500444 ggaatgagcaagtggaagaaatagaggaaaatgggagaggagggctttgaggagttaactttccttcataagacaaaaccct 33500525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 344
Target Start/End: Original strand, 44076568 - 44076606
Alignment:
Q  306 agggctttggggggttaatttttcttcataatacaaaac 344  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  44076568 agggctttgggggattaatttttcttcataatacaaaac 44076606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 342
Target Start/End: Complemental strand, 45022867 - 45022800
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaa 342  Q
    ||||||||||||||| |||| ||  ||| |||||||||| | ||||| ||||||||| ||||||||||    
T  45022867 aagtggaaaaaataggggactttgagaggggagggctttagtgggttcatttttctttataatacaaa 45022800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 353
Target Start/End: Complemental strand, 22891399 - 22891357
Alignment:
Q  311 tttggggggttaatttttcttcataatacaaaacccttatcat 353  Q
    |||||||||||||||||||| | |||||||||| |||||||||    
T  22891399 tttggggggttaatttttctccgtaatacaaaaaccttatcat 22891357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 353
Target Start/End: Complemental strand, 22943063 - 22943021
Alignment:
Q  311 tttggggggttaatttttcttcataatacaaaacccttatcat 353  Q
    |||||||||||||||||||| | |||||||||| |||||||||    
T  22943063 tttggggggttaatttttctccgtaatacaaaaaccttatcat 22943021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 47063626 - 47063698
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||||||||||||||||||| ||||  || || ||||||||| | ||||||||| | |||| ||||||||    
T  47063626 taagtggaaaaaatagaggacattcggaggaga-ggttttggggggcttatttttctttaaaatataaaaccct 47063698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 52636631 - 52636680
Alignment:
Q  204 ttaggttttgtttgcaagtttggaggggaaggaatggaaggattttggaa 253  Q
    ||||| ||||||||| |||||||||||||||| |||| || |||||||||    
T  52636631 ttaggctttgtttgcgagtttggaggggaagggatgggagaattttggaa 52636680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 54205769 - 54205840
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggcttt---ggggggttaatttttcttcataatacaaaa 343  Q
    |||||||| ||||||||||| ||  ||| ||||||||||   |||||||| |||||||||||||| ||||||    
T  54205769 aagtggaagaaatagaggactttgagaggggagggctttgggggggggttcatttttcttcataaaacaaaa 54205840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 21081283 - 21081355
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||| ||||||| ||||||  ||| |||  | ||||| ||||| |||||||||||||| ||||||||||    
T  21081283 aagtggaagaaatagatgacattgagaggggaatgttttggagggttcatttttcttcataaaacaaaaccct 21081355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 340
Target Start/End: Complemental strand, 27938904 - 27938868
Alignment:
Q  304 ggagggctttggggggttaatttttcttcataataca 340  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  27938904 ggagggctttggggagtttatttttcttcataataca 27938868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 346
Target Start/End: Original strand, 45971486 - 45971565
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccc 346  Q
    |||||||  |||||||| |||||||||| | |  ||| |||||| |||||||| |||| ||||||||||||||| ||||||    
T  45971486 ggaatgagcaagtggaagaaatagaggaaaatgagaggggagggttttggggg-ttaacttttcttcataatactaaaccc 45971565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 342
Target Start/End: Complemental strand, 51153693 - 51153618
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaa 342  Q
    ||||||| |||||| || ||||||| || | | |||| |||||| ||| |||| |||||||||||||||||||||||    
T  51153693 ggaatgagtaagtgcaagaaatagaagaaaatgggaggggagggttttagggg-ttaatttttcttcataatacaaa 51153618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 39193864 - 39193936
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  39193864 aagtggaagaaatagagtacattgggaggggagggctttggggggttaatttttcttcataatataaaaccct 39193936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 266 - 347
Target Start/End: Complemental strand, 21174014 - 21173934
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||  |||||||| ||||||| || | | |||||||||||||||||||| |||| |||||||||||||||||||||||    
T  21174014 ggaatgagcaagtggaagaaatagaagaaaatgggagaggagggctttggggg-ttaacttttcttcataatacaaaaccct 21173934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 23932706 - 23932634
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||| |||||||||| | |  ||||||||||||||||||| |||| |||||||||||||||||||||||    
T  23932706 taagtggaagaaatagaggaaaatgagagaggagggctttggggg-ttaacttttcttcataatacaaaaccct 23932634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 79761 - 79689
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||| |||||||||| | | |||| |||||||||||||||||||  ||||||||||||||| |||||||    
T  79761 aagtggaagaaatagaggaaaatgggaggggagggctttggggggttacgttttcttcataatactaaaccct 79689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 353
Target Start/End: Complemental strand, 26772798 - 26772712
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaacccttatcat 353  Q
    |||||||  |||||||| ||||||| || | | |||||||||| ||||||| |||||| ||||||||||||||||||||||| |||||    
T  26772798 ggaatgagcaagtggaagaaatagaagaaaatgggagaggagg-ctttgggaggttaacttttcttcataatacaaaaccctcatcat 26772712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 36837622 - 36837563
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcat 334  Q
    ||||||||| |||||||||| | |||||||||||||||||| |||||||| ||||||||||    
T  36837622 taagtggaagaaatagaggaaaataggagaggagggctttg-ggggttaacttttcttcat 36837563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 1840353 - 1840274
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggg-------gggttaatttttcttcataatacaaaaccct 347  Q
    |||||||| |||| ||||||||| ||||||||||||||||||       ||| |||||||||||||| ||||||||||||    
T  1840353 aagtggaagaaattgaggacattcggagaggagggctttgggggggggaggggtaatttttcttcatgatacaaaaccct 1840274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 353
Target Start/End: Complemental strand, 4166776 - 4166712
Alignment:
Q  289 gaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaacccttatcat 353  Q
    ||||||||| |||| | | | ||||||||||| ||||||||||||||||||||||| ||| ||||    
T  4166776 gaggacattgggagggaatgactttggggggtaaatttttcttcataatacaaaactcttctcat 4166712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 353
Target Start/End: Complemental strand, 5858406 - 5858333
Alignment:
Q  279 ggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaacccttatcat 353  Q
    |||| ||||||| |||||| ||||  ||||||||||||||||  ||||||||||| |||| |||||||| |||||    
T  5858406 ggaagaaatagatgacatt-ggaggagagggctttggggggtatatttttcttcaaaatataaaaccctcatcat 5858333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 343
Target Start/End: Original strand, 13258470 - 13258500
Alignment:
Q  313 tggggggttaatttttcttcataatacaaaa 343  Q
    |||||||||||||||||||||||||||||||    
T  13258470 tggggggttaatttttcttcataatacaaaa 13258500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 1839968 - 1839896
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||| |||||||||||||| ||| ||  ||||||||| ||| | ||||||||||| |||| ||||||||    
T  1839968 taagtggaagaaatagaggacattggga-agaggggctttggagggcttatttttcttcaaaatataaaaccct 1839896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 28416382 - 28416349
Alignment:
Q  204 ttaggttttgtttgcaagtttggaggggaaggaa 237  Q
    ||||| ||||||||||||||||||||||||||||    
T  28416382 ttaggatttgtttgcaagtttggaggggaaggaa 28416349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 343
Target Start/End: Original strand, 31149881 - 31149914
Alignment:
Q  310 ctttggggggttaatttttcttcataatacaaaa 343  Q
    ||||||||||||||||||||||| ||||||||||    
T  31149881 ctttggggggttaatttttcttcctaatacaaaa 31149914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 43239594 - 43239671
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaa 343  Q
    ||||||| |||| | || |||||||||| | | |||| ||||||||||  |||||||| |||||||||||| ||||||    
T  43239594 ggaatgaataagagaaagaaatagaggaaaatgggaggggagggctttatggggttaacttttcttcataacacaaaa 43239671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 2457981 - 2457945
Alignment:
Q  307 gggctttggggggttaatttttcttcataatacaaaa 343  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  2457981 gggctttggggagtttatttttcttcataatacaaaa 2457945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 343
Target Start/End: Complemental strand, 35376776 - 35376708
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaa 343  Q
    |||||||  ||||| ||||||||   || |||| ||||||||||||| |||||||||||| ||||||||    
T  35376776 aagtggacgaaataaaggacattgaaaggggagagctttggggggttcatttttcttcatgatacaaaa 35376708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 26311 - 26384
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||| |||||||||| | | ||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  26311 taagtggaagaaatagaggaaaatgggagaggagggctttggggggataacttttcttcataatacaaaaccct 26384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 3537132 - 3537213
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||| ||||||||| |||||||||| | | |||| ||||||||||||| |||||| |||||||||||||||||||||||    
T  3537132 ggaatgagtaagtggaagaaatagaggaaaatgggaggggagggctttgggaggttaacttttcttcataatacaaaaccct 3537213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 29623171 - 29623242
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||| ||||||||||||||||||| |||||||||| |  ||||||||||||||||||||||||||||||    
T  29623171 aagtggaagaaatagaggacattaggaggggagggcttt-gatggttaatttttcttcataatacaaaaccct 29623242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 517777 - 517707
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||| |||||||||| | |||||||| ||||||||||||  ||||||||||||||||||||||||||||    
T  517777 aagtggaagaaatagaggaaaataggagagaagggctttgggg--ttaatttttcttcataatacaaaaccct 517707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 33944788 - 33944716
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||| |||||||||| | | |||||||||||||||||||| |||| |||||||||||||||||||||||    
T  33944788 taagtggaagaaatagaggaaaatgggagaggagggctttggggg-ttaacttttcttcataatacaaaaccct 33944716  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 38639521 - 38639594
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||| |||||||||| | | |||||||| || ||||||||||||| |||||||||||||||||||||||    
T  38639521 taagtggaagaaatagaggaaaatgggagaggaaggttttggggggttaacttttcttcataatacaaaaccct 38639594  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 37674288 - 37674216
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||| ||||| |||| | | ||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  37674288 aagtggaagaaataaaggaaaatgggagaggagggctttggggggttaacttttcttcatgatacaaaaccct 37674216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 266 - 347
Target Start/End: Complemental strand, 33909105 - 33909025
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||  |||||||| |||||||||| | | ||| |||||||||||||||| |||| |||||||||||||||||||||||    
T  33909105 ggaatgagcaagtggaagaaatagaggaaaatggga-aggagggctttgggggattaacttttcttcataatacaaaaccct 33909025  T

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Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 48909022 - 48908950
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||| |||||||||| | | |||||||| ||||||||||| |||| |||||||||||||||||||||||    
T  48909022 taagtggaagaaatagaggaaaatgggagaggaaggctttggggg-ttaacttttcttcataatacaaaaccct 48908950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 293 - 347
Target Start/End: Complemental strand, 40119014 - 40118960
Alignment:
Q  293 acattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||| |||| ||||||||||||||||||||||||||||||| | ||||||||||    
T  40119014 acattgggaggggagggctttggggggttaatttttcttcattaaacaaaaccct 40118960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 5939938 - 5939861
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaa 343  Q
    |||||||  |||||||| |||||||||| | | ||||| || || ||||||||||||| |||||||||||||||||||    
T  5939938 ggaatgagcaagtggaagaaatagaggaaaatgggagatgaaggttttggggggttaacttttcttcataatacaaaa 5939861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 44400634 - 44400714
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||  |||||||| ||||| |||| | | ||||||||||||||| ||||||||| |||||||||| ||||||||||||    
T  44400634 ggaatgagcaagtggaagaaataaaggaaaatgggagaggagggcttt-gggggttaacttttcttcatgatacaaaaccct 44400714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 347
Target Start/End: Complemental strand, 53664756 - 53664675
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||  |||||||| ||||||| || | |  ||||||||| ||||| |||||||| |||||||||||||||||||||||    
T  53664756 ggaatgagcaagtggaagaaatagaagaaaatgagagaggaggactttgaggggttaacttttcttcataatacaaaaccct 53664675  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 277 - 347
Target Start/End: Original strand, 50948140 - 50948211
Alignment:
Q  277 gtggaaaaaatagaggacattaggagaggagggctttggg-gggttaatttttcttcataatacaaaaccct 347  Q
    |||||| ||||||| || | | ||||||||||||||| || ||||||| |||||||||||||||||||||||    
T  50948140 gtggaagaaatagaagaaaatgggagaggagggcttttggagggttaacttttcttcataatacaaaaccct 50948211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 25754249 - 25754178
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||| || |||||||||| | | |||||||||||||||||||  || | |||||||||||||||||||||||    
T  25754249 taagtgaaagaaatagaggataatgggagaggagggctttgggg--ttgacttttcttcataatacaaaaccct 25754178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 30995807 - 30995872
Alignment:
Q  278 tggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaac 344  Q
    ||||| ||||||| || ||| |||||| |||| |||||| |||||||||||||||||||||||||||    
T  30995807 tggaagaaatagaagatattgggagagaaggg-tttgggaggttaatttttcttcataatacaaaac 30995872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 39478039 - 39478108
Alignment:
Q  275 aagtggaaaaaatagaggacattag-gagaggagggctttggggggttaatttttcttcataatacaaaa 343  Q
    |||||||||||||||||||| || | |||| ||||||||||| || || ||||||||| |||||||||||    
T  39478039 aagtggaaaaaatagaggacttttgagagacgagggctttggaggttttatttttctttataatacaaaa 39478108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 347
Target Start/End: Original strand, 27197190 - 27197257
Alignment:
Q  279 ggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||||||||| | | |||| |||||| |||||||| |||| | |||||||||||||||||||||    
T  27197190 ggaaaaaatagaggaaaatgggaggggagggttttggggg-ttaactattcttcataatacaaaaccct 27197257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 353
Target Start/End: Complemental strand, 1340019 - 1339968
Alignment:
Q  302 gaggagggctttggggggttaatttttcttcataatacaaaacccttatcat 353  Q
    |||||||||||  |||||||||||||||||||||||||| ||| || |||||    
T  1340019 gaggagggcttcagggggttaatttttcttcataatacataactctcatcat 1339968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 339
Target Start/End: Original strand, 49183658 - 49183693
Alignment:
Q  304 ggagggctttggggggttaatttttcttcataatac 339  Q
    |||||||||||||||||||| |||||||||||||||    
T  49183658 ggagggctttggggggttaacttttcttcataatac 49183693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 347
Target Start/End: Original strand, 35283054 - 35283092
Alignment:
Q  309 gctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  35283054 gctttggggggttaatttttcttcaaaatataaaaccct 35283092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 328
Target Start/End: Complemental strand, 49683158 - 49683097
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaattttt 328  Q
    |||||||  |||||||||||||||| |||||||||||  ||||||||| || |||||||||||    
T  49683158 ggaatgagcaagtggaaaaaatagaagacattaggaggagagggcttt-ggaggttaattttt 49683097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 53664424 - 53664470
Alignment:
Q  204 ttaggttttgtttgcaagtttggaggggaaggaatggaaggattttg 250  Q
    ||||| ||||||||| |||||||||||||||||| |||| |||||||    
T  53664424 ttaggctttgtttgcgagtttggaggggaaggaaaggaaagattttg 53664470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 344
Target Start/End: Original strand, 22225292 - 22225368
Alignment:
Q  267 gaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaac 344  Q
    |||||| ||| ||||| |||||||||| | ||||||  ||| |||||| ||| |||||||||||||||||||| ||||    
T  22225292 gaatgagtaaatggaacaaatagaggaaaataggaggagagagctttgaggg-ttaatttttcttcataatactaaac 22225368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 347
Target Start/End: Complemental strand, 45571088 - 45571019
Alignment:
Q  278 tggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||| |||||||||| | | | || |||||||| ||||||||| ||||||||||||||||  |||||||    
T  45571088 tggaagaaatagaggaaaatggaaggggagggctatggggggttcatttttcttcataatattaaaccct 45571019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 349
Target Start/End: Original strand, 43263698 - 43263730
Alignment:
Q  317 gggttaatttttcttcataatacaaaaccctta 349  Q
    |||||| ||||||||||||||||||||||||||    
T  43263698 gggttattttttcttcataatacaaaaccctta 43263730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 343
Target Start/End: Complemental strand, 49855955 - 49855888
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaa 343  Q
    ||||| || ||||||| ||||||  ||||||| || |||||||| || |||||||||||||||||||||    
T  49855955 aagtgaaagaaatagatgacattgagagaggaaggttttggggg-ttcatttttcttcataatacaaaa 49855888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 344
Target Start/End: Original strand, 54126220 - 54126284
Alignment:
Q  280 gaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaac 344  Q
    |||||||||||| ||||| |||  ||||||||||  |||||| |||||||| ||| |||||||||    
T  54126220 gaaaaaatagagaacattgggaagggagggctttctggggttcatttttctccatgatacaaaac 54126284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 5584429 - 5584510
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||  |||||||| ||||||| || | | ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5584429 ggaatgagcaagtggaagaaatagaagaaaatgggagaggagggctttggggggttaacttttcttcataatacaaaaccct 5584510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 27255133 - 27255214
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||  |||||||| |||||||||| | | |||||||||||||||||| |||||| |||||||||||||||||||||||    
T  27255133 ggaatgagcaagtggaagaaatagaggaaaatgggagaggagggctttgggaggttaacttttcttcataatacaaaaccct 27255214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 7915446 - 7915518
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||||| | ||||||    
T  7915446 aagtggaaaaaatagagaactttgggagaggagggctttggggggttcatttttcttcataatatagaaccct 7915518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 17760623 - 17760551
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||| |||||||||| | | ||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  17760623 aagtggaagaaatagaggaaaatgggagaggagagctttggggggttaacttttcttcataatacaaaaccct 17760551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 29092019 - 29092091
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||| |||||||||| | | ||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  29092019 taagtggaagaaatagaggaaaatgggagaggagggcttt-gggggttaacttttcttcataatacaaaaccct 29092091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 36269667 - 36269748
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||  |||||||| |||||||| | | | |||| |||||||||||||||||||| |||||||||||||||||||||||    
T  36269667 ggaatgagcaagtggaagaaatagagaaaaatgggaggggagggctttggggggttaacttttcttcataatacaaaaccct 36269748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 37649765 - 37649692
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||| |||||||||| | | ||||||||||||||||||| ||||| ||||||| |||||||||||||||    
T  37649765 taagtggaagaaatagaggaaaatgggagaggagggctttggggtgttaacttttctttataatacaaaaccct 37649692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 50586981 - 50587048
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaa 343  Q
    |||||||| ||||||||||||||  ||| |||||||||||||||||| |||||||||||||||||||||    
T  50586981 aagtggaagaaatagaggacattgagag-ggagggctttggggggttcatttttcttcataatacaaaa 50587048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 274 - 353
Target Start/End: Complemental strand, 41817447 - 41817369
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaacccttatcat 353  Q
    ||||||||| |||||||||| | | |||||||||| ||||||||| |||| ||||||||||||||||||||||| |||||    
T  41817447 taagtggaagaaatagaggaaaatgggagaggaggactttggggg-ttaacttttcttcataatacaaaaccctcatcat 41817369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 5970579 - 5970507
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||| ||| |||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| | ||||||    
T  5970579 taagttgaagaaatagagtacattaggaggggagggctttg-ggggttaatttttcttcataatatagaaccct 5970507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 279 - 347
Target Start/End: Complemental strand, 33854982 - 33854914
Alignment:
Q  279 ggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||| |||||||||| |||||||| |||| | ||||  |||||||||||||||||||||||||||||||    
T  33854982 ggaagaaatagaggatattaggaggggagtgttttgcagggttaatttttcttcataatacaaaaccct 33854914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 279 - 347
Target Start/End: Original strand, 33925940 - 33926008
Alignment:
Q  279 ggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||| |||||||||| |||||||| |||| | ||||  |||||||||||||||||||||||||||||||    
T  33925940 ggaagaaatagaggatattaggaggggagtgttttgcagggttaatttttcttcataatacaaaaccct 33926008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 345
Target Start/End: Complemental strand, 34154477 - 34154406
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaacc 345  Q
    ||||||||| |||||||||| | |   ||| ||||||||||||||||||| |||||||||||||||||||||    
T  34154477 taagtggaagaaatagaggaaaatgaaagatgagggctttggggggttaacttttcttcataatacaaaacc 34154406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 274 - 340
Target Start/End: Original strand, 47742463 - 47742529
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataataca 340  Q
    ||||||||| ||||||||||||||  ||  ||||||||||||||||||||||||| ||| |||||||    
T  47742463 taagtggaagaaatagaggacattgagaagggagggctttggggggttaatttttgttcctaataca 47742529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 275 - 335
Target Start/End: Complemental strand, 38858153 - 38858094
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcata 335  Q
    |||||||| ||| ||||||||||  |||||||| |||||||||||||||||||||||||||    
T  38858153 aagtggaagaaa-agaggacattgagagaggagagctttggggggttaatttttcttcata 38858094  T

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Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 52068285 - 52068216
Alignment:
Q  278 tggaaaaaatagaggacattaggagaggagggctttgggggg---ttaatttttcttcataatacaaaac 344  Q
    ||||| |||||||||| | | |||||||||||||||||||||   |||| ||||||||||||||||||||    
T  52068285 tggaagaaatagaggaaaatgggagaggagggctttgggggggggttaacttttcttcataatacaaaac 52068216  T

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Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 347
Target Start/End: Original strand, 33324597 - 33324639
Alignment:
Q  305 gagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||||||||||||| ||||||||||||||| |||||||    
T  33324597 gagggctttggggggttaacttttcttcataatactaaaccct 33324639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 2494108 - 2494043
Alignment:
Q  278 tggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaa 343  Q
    ||||| ||||||| || || || ||||||| ||||||||||||| |||||||||| ||||||||||    
T  2494108 tggaagaaatagatgatatgagaagaggagagctttggggggttgatttttcttcctaatacaaaa 2494043  T

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Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 17556600 - 17556672
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||| |||||||||||||| ||||  |||| |||||||||| | ||||||||||| |||| ||||||||    
T  17556600 taagtggaagaaatagaggacattgggaggagagg-ctttggggggcttatttttcttcaaaatataaaaccct 17556672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 32511733 - 32511688
Alignment:
Q  299 ggagaggagggctttggggggttaatttttcttcataatacaaaac 344  Q
    |||| |||||||||| ||||||||| ||||||||||||||||||||    
T  32511733 ggaggggagggctttagggggttaacttttcttcataatacaaaac 32511688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 43036460 - 43036389
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||| |||||||| ||||| ||||  | ||||||||||||||||||||||||||| |||| ||||||||    
T  43036460 taagtggaagaaatagagtacattgggaggag-gggctttggggggttaatttttcttca-aatataaaaccct 43036389  T

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Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 46001499 - 46001571
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||| |||||||||| | | ||||||||||| ||| || |||||| |||||||||||||| ||||||||    
T  46001499 taagtggaagaaatagaggaaaatgggagaggaggg-ttttggaggttaacttttcttcataatataaaaccct 46001571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 343
Target Start/End: Complemental strand, 27102972 - 27102904
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaa 343  Q
    ||||| || ||||||| || ||| |||| |||| |||||||| |||| |||||||||||||||||||||    
T  27102972 aagtgaaagaaatagaagatatttggaggggagtgctttgggaggttcatttttcttcataatacaaaa 27102904  T

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Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 32672547 - 32672619
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||| || |||||||||| |  | ||||||| |||||||||||||||| |||||||||| |||| |||||||    
T  32672547 aagtgcaagaaatagaggaaaacaagagaggacggctttggggggttaacttttcttcatcatactaaaccct 32672619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 346
Target Start/End: Original strand, 36886794 - 36886873
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccc 346  Q
    |||||||  |||||||| |||||||||| | |  ||| ||||||||||||||| |||| ||||||||||||||| ||||||    
T  36886794 ggaatgagcaagtggaagaaatagaggaaaatgagaggggagggctttggggg-ttaacttttcttcataatactaaaccc 36886873  T

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Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 347
Target Start/End: Original strand, 69696 - 69739
Alignment:
Q  304 ggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||| ||||||||||||| ||||||||||||||| |||||||    
T  69696 ggagggttttggggggttaacttttcttcataatactaaaccct 69739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 251
Target Start/End: Complemental strand, 26940844 - 26940797
Alignment:
Q  204 ttaggttttgtttgcaagtttggaggggaaggaatggaaggattttgg 251  Q
    ||||| |||||||| ||||||||||||||||||| || ||||||||||    
T  26940844 ttaggctttgtttggaagtttggaggggaaggaaggggaggattttgg 26940797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 347
Target Start/End: Complemental strand, 39887045 - 39887002
Alignment:
Q  304 ggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||||||| |||||| ||||||||||||||| |||||||    
T  39887045 ggagggctttgggtggttaacttttcttcataatactaaaccct 39887002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 41432911 - 41432841
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||| ||||| | ||||||  ||| ||| ||||||||||| || |||||||||||||||| ||||||||    
T  41432911 aagtggaagaaatatatgacatt--gaggggaaggctttgggggtttcatttttcttcataatataaaaccct 41432841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 49103100 - 49103028
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||| |||||||||||||| ||||  | ||||||||| ||||| ||||||||||| || | ||||||||    
T  49103100 taagtggaagaaatagaggacattgggaggag-gggctttggagggtttatttttcttcaaaacataaaaccct 49103028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 345
Target Start/End: Original strand, 50097561 - 50097631
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagagg-agggctttggggggttaatttttcttcataatacaaaacc 345  Q
    ||||||||||||||||||||||||  |||||| | |  ||||||||||| ||||||||||| |||| ||||||    
T  50097561 taagtggaaaaaatagaggacatt--gagaggaatgattttggggggtttatttttcttcaaaatataaaacc 50097631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 35619332 - 35619379
Alignment:
Q  204 ttaggttttgtttgcaagtttggaggggaaggaatggaaggattttgga 252  Q
    |||||||||||||| ||||||||||||| ||||||| || |||||||||    
T  35619332 ttaggttttgtttggaagtttggagggggaggaatgtaa-gattttgga 35619379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 37955132 - 37955176
Alignment:
Q  299 ggagaggagggctttggggggttaatttttcttcataatacaaaa 343  Q
    |||| |||||| ||||| | |||||||||||||||||||||||||    
T  37955132 ggaggggagggttttggagtgttaatttttcttcataatacaaaa 37955176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 347
Target Start/End: Original strand, 42333622 - 42333650
Alignment:
Q  319 gttaatttttcttcataatacaaaaccct 347  Q
    |||||||||||||||||||||||||||||    
T  42333622 gttaatttttcttcataatacaaaaccct 42333650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 52073595 - 52073524
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||| ||||||| ||||||  ||| ||| ||||||||||  || ||||||||||||||| |||||||||    
T  52073595 aagtggaagaaatagatgacattgagaggggaaggctttggggt-ttcatttttcttcataattcaaaaccct 52073524  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 1567205 - 1567286
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||  |||||||| ||||||| || | | ||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  1567205 ggaatgagcaagtggaagaaatagaagaaaatgggagaggagagctttggggggttaacttttcttcataatacaaaaccct 1567286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 32719524 - 32719452
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||| |||||||||| | | ||| |||||||||||||||| |||| |||||||||||||||||||||||    
T  32719524 taagtggaagaaatagaggaaaatgggaaaggagggctttggggg-ttaacttttcttcataatacaaaaccct 32719452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 266 - 347
Target Start/End: Complemental strand, 33590484 - 33590403
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||  ||||| ||||||||||||| | | |||| |||||  ||||||||||||| |||||||||||||||||||||||    
T  33590484 ggaatgagcaagtgaaaaaaatagaggaaaatgggaggggaggattttggggggttaacttttcttcataatacaaaaccct 33590403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 26713796 - 26713855
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcat 334  Q
    |||||||| |||||||| ||||| |||| ||||||||||| |||||||||||||||||||    
T  26713796 aagtggaagaaatagagtacattgggaggggagggctttgaggggttaatttttcttcat 26713855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 347
Target Start/End: Complemental strand, 11180315 - 11180235
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||  |||| ||| |||||||||| | | ||| ||||||||||||||||||||| |||||| ||||||||||||||||    
T  11180315 ggaatgagcaagtagaagaaatagaggaaaatggga-aggagggctttggggggttaacttttctccataatacaaaaccct 11180235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 20820654 - 20820609
Alignment:
Q  299 ggagaggagggctttggggggttaatttttcttcataatacaaaac 344  Q
    |||| |||||||||||||||||||| ||||||||||||||| ||||    
T  20820654 ggaggggagggctttggggggttaacttttcttcataatactaaac 20820609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 344
Target Start/End: Complemental strand, 28552042 - 28551964
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaac 344  Q
    |||||||  |||||||| ||||||| || | | |||| ||| ||||||| |||||||  ||||||||||||||||||||    
T  28552042 ggaatgagcaagtggaagaaatagaagaaaatgggaggggatggctttgaggggttagcttttcttcataatacaaaac 28551964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 10842977 - 10843049
Alignment:
Q  274 taagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||| |||||||||| | | ||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  10842977 taagtggaagaaatagaggaaaatgggagaggagggcttt-gggggttaacttttcttcataatacaaaaccct 10843049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 266 - 347
Target Start/End: Complemental strand, 35683630 - 35683549
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||  |||||||| ||||||| || | | |||||||||||||| |||||||||| |||||||||||||||||||||||    
T  35683630 ggaatgagcaagtggaagaaatagaagaaaatgggagaggagggcttcggggggttaacttttcttcataatacaaaaccct 35683549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 39649495 - 39649576
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||  |||||||| ||||| | || | | ||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  39649495 ggaatgagcaagtggaagaaataaatgaaaatgggagaggagggctttggggggttaacttttcttcatgatacaaaaccct 39649576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 5772867 - 5772796
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||| ||||||| || | | |||||||||||||||||||| |||| |||||||||||||||||||||||    
T  5772867 aagtggaagaaatagaagaaaatgggagaggagggctttggggg-ttaacttttcttcataatacaaaaccct 5772796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 347
Target Start/End: Complemental strand, 21916438 - 21916369
Alignment:
Q  278 tggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||| ||||||| |||| | |||| ||||| ||||| ||||||||||||||||||| ||||||||||||    
T  21916438 tggaagaaatagatgacactgggaggggaggactttgaggggttaatttttcttcatgatacaaaaccct 21916369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 38568491 - 38568443
Alignment:
Q  299 ggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||| |||||||||||||||||||| ||||||||||||||| |||||||    
T  38568491 ggaggggagggctttggggggttaacttttcttcataatactaaaccct 38568443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 344
Target Start/End: Original strand, 6044475 - 6044538
Alignment:
Q  281 aaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaac 344  Q
    |||||||||| || |||||||| ||| ||||||| | ||||||||||||||||||||| |||||    
T  6044475 aaaaaatagacgatattaggaggggatggctttgagaggttaatttttcttcataatagaaaac 6044538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 353
Target Start/End: Original strand, 22103490 - 22103528
Alignment:
Q  315 gggggttaatttttcttcataatacaaaacccttatcat 353  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  22103490 gggggttaatttttcttcataatacaaaaccctcatcat 22103528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 343
Target Start/End: Original strand, 37908960 - 37909002
Alignment:
Q  301 agaggagggctttggggggttaatttttcttcataatacaaaa 343  Q
    ||||||||||||||||||||| | |||||||||||||||||||    
T  37908960 agaggagggctttggggggtttaattttcttcataatacaaaa 37909002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 10437910 - 10437987
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaa 343  Q
    |||||||  |||||||| |||||||| | | | |||| ||||| |||||||||||||| ||||||| |||||||||||    
T  10437910 ggaatgagcaagtggaagaaatagagaaaaatgggaggggaggtctttggggggttaacttttctttataatacaaaa 10437987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 347
Target Start/End: Complemental strand, 14570197 - 14570116
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||  |||||||  |||||||||| | | |||| |||||||||||| ||||||| ||||||| ||||||| |||||||    
T  14570197 ggaatgaccaagtggacgaaatagaggaaaatgggaggggagggctttggagggttaacttttctttataatactaaaccct 14570116  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 43496983 - 43496939
Alignment:
Q  299 ggagaggagggctttggggggttaatttttcttcataatacaaaac 344  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||    
T  43496983 ggagaggagggctttggggg-ttaatttttcttaataatacaaaac 43496939  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 10955806 - 10955766
Alignment:
Q  307 gggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  10955806 gggctttggggggttaacttttcatcataatacaaaaccct 10955766  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 35704643 - 35704681
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggcttt 313  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  35704643 aagtggaagaaatagaggacattgggagaggagggcttt 35704681  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 347
Target Start/End: Complemental strand, 1978038 - 1978006
Alignment:
Q  315 gggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||||||||||||| ||||||||||||||    
T  1978038 gggggttaatttttcttcgtaatacaaaaccct 1978006  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 343
Target Start/End: Complemental strand, 6491470 - 6491403
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaa 343  Q
    |||||||| ||||||| || ||| | ||  |||||||||||||| || |||||||||||||||||||||    
T  6491470 aagtggaagaaatagaagaaattggtaggagagggctttggggg-ttcatttttcttcataatacaaaa 6491403  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 13569321 - 13569364
Alignment:
Q  299 ggagaggagggctttggggggttaatttttcttcataatacaaaa 343  Q
    ||||||||||| |||||||| |||| |||||||||||||||||||    
T  13569321 ggagaggagggttttggggg-ttaacttttcttcataatacaaaa 13569364  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 32824620 - 32824663
Alignment:
Q  299 ggagaggagggctttggggggttaatttttcttcataatacaaaa 343  Q
    |||| |||||||||||||||||| | |||||||||||||||||||    
T  32824620 ggagcggagggctttggggggttca-ttttcttcataatacaaaa 32824663  T

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Target: scaffold0136 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 266 - 347
Target Start/End: Complemental strand, 2179 - 2099
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||  |||||||| ||||||| || | | |||||||||||||||||||| |||| |||||||||||||||||||||||    
T  2179 ggaatgagcaagtggaagaaatagaagaaaatgggagaggagggctttggggg-ttaacttttcttcataatacaaaaccct 2099  T

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Target: scaffold0248 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 343 - 272
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||| |||||||||| | | ||||||||| |||||||||| |||| |||||||||||||||||||||||    
T  343 aagtggaagaaatagaggaaaatgggagaggagagctttggggg-ttaacttttcttcataatacaaaaccct 272  T

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Target: scaffold0263 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 297 - 347
Target Start/End: Complemental strand, 12375 - 12325
Alignment:
Q  297 taggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  12375 taggaggggagggctttggggggttaacttttcttcatattacaaaaccct 12325  T

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Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 297 - 347
Target Start/End: Complemental strand, 91001 - 90951
Alignment:
Q  297 taggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  91001 taggaggggagggctttggggggttaacttttcttcatattacaaaaccct 90951  T

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Target: scaffold0053 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 353
Target Start/End: Original strand, 29169 - 29255
Alignment:
Q  266 ggaatgattaagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaacccttatcat 353  Q
    |||||||  |||||||| ||||||| || | | |||||| ||||||||| ||| |||| ||||||||||||||||||||||| |||||    
T  29169 ggaatgagcaagtggaagaaatagaagaaaatgggagagaagggctttgaggg-ttaacttttcttcataatacaaaaccctcatcat 29255  T

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Target: scaffold0051 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 833 - 766
Alignment:
Q  280 gaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||||||||| | | |||| ||||||  |||| ||||||| |||||||||||||||||||||||    
T  833 gaaaaaatagaggaaaatgggaggggagggaattggagggttaacttttcttcataatacaaaaccct 766  T

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Target: scaffold0051; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 3710 - 3643
Alignment:
Q  280 gaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||||||||||||| | | |||| ||||||  |||| ||||||| |||||||||||||||||||||||    
T  3710 gaaaaaatagaggaaaatgggaggggagggaattggagggttaacttttcttcataatacaaaaccct 3643  T

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Target: scaffold0051; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 347
Target Start/End: Complemental strand, 6901 - 6833
Alignment:
Q  279 ggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||||||| | | | |||| ||||||  ||||  |||||| |||||||||||||||||||||||    
T  6901 ggaaaaaatagagaaaaatgggaggggagggaattggaaggttaacttttcttcataatacaaaaccct 6833  T

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Target: scaffold0051; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 347
Target Start/End: Complemental strand, 7884 - 7816
Alignment:
Q  279 ggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    ||||||||||||| | | | |||| ||||||  ||||  |||||| |||||||||||||||||||||||    
T  7884 ggaaaaaatagagaaaaatgggaggggagggaattggaaggttaacttttcttcataatacaaaaccct 7816  T

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Target: scaffold0388 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 7003 - 7075
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaaccct 347  Q
    |||| ||| |||||||||| | | |||| |||||| |||||| |||| | |||||||||||||||||||||||    
T  7003 aagtagaagaaatagaggaaaatgggaggggagggttttgggaggtttacttttcttcataatacaaaaccct 7075  T

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Target: scaffold0036 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 82729 - 82797
Alignment:
Q  275 aagtggaaaaaatagaggacattaggagaggagggctttggggggttaatttttcttcataatacaaaa 343  Q
    |||||||| ||||||| ||| ||  ||||  |||||||| ||||||| |||||||||||||||||||||    
T  82729 aagtggaagaaatagatgactttgagagaaaagggctttcgggggtttatttttcttcataatacaaaa 82797  T

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Target: scaffold0031 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 344
Target Start/End: Complemental strand, 93628 - 93585
Alignment:
Q  301 agaggagggctttggggggttaatttttcttcataatacaaaac 344  Q
    ||||||| | ||||||||||||| ||||||||||||||||||||    
T  93628 agaggagtgttttggggggttaacttttcttcataatacaaaac 93585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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