View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11240_low_16 (Length: 345)
Name: NF11240_low_16
Description: NF11240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11240_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 6284153 - 6283936
Alignment:
| Q |
16 |
gtagttgtattcactacagaggtataaatgaggtgaaagtattcatgaatttctcagaatcaattcg----ttaaattttcaatcaaacttggttatttt |
111 |
Q |
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| T |
6284153 |
gtagttgtattcactagagatgtataaatgaggtgaaactattcataaatttctcaggatcaattcgttaattaaattttctatcaaacttggttatttt |
6284054 |
T |
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| Q |
112 |
aattaaatacaa-agatc---ttaaaattgacgccaatattatttaaataaatcaaacataaacccgacatactccacataacagctcttgaataccccc |
207 |
Q |
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| T |
6284053 |
aattaaatacaagagctcaagttaaatttgacgcca--attatttaaataaatcaaacataaacccgatatcctcgacataacagctcttgaataacccc |
6283956 |
T |
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| Q |
208 |
aaaggatattactatactac |
227 |
Q |
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||||| |||||||||||||| |
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| T |
6283955 |
aaagggtattactatactac |
6283936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 290 - 345
Target Start/End: Complemental strand, 6283875 - 6283820
Alignment:
| Q |
290 |
acaataaaaacctctagtcaagtttgatccacccatcctttttacaagataagttc |
345 |
Q |
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| T |
6283875 |
acaataaaaatctctagtcaagtttgatccacccatcctttttacaagataagttc |
6283820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 245 - 306
Target Start/End: Complemental strand, 6283948 - 6283887
Alignment:
| Q |
245 |
attactttacttcttataaataatgttttgacttctaagatcaagacaataaaaacctctag |
306 |
Q |
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|||||| |||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6283948 |
attactatactacttaaaaataatgtttggacttctaagatcaagacaataaaaacctctag |
6283887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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