View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11240_low_17 (Length: 333)
Name: NF11240_low_17
Description: NF11240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11240_low_17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 6 - 333
Target Start/End: Complemental strand, 35905120 - 35904793
Alignment:
| Q |
6 |
aggagcagagaagagtactatgggcagtggtgcaaatttagccatggctcaaggactgtgtcgatatttctctttacaagagatgaagcaagcaaccaag |
105 |
Q |
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| T |
35905120 |
aggatcagggaagagtactatgggcagtggtgcaaatttagccatggctcaaggactgtgtcgatatttctctttacaagagatgaagcaagcaaccaag |
35905021 |
T |
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| Q |
106 |
aattttgatgagtccaatgttattggtgtaggagggtttggaaaggtttacaagggtgttattgataatggtgttaaagtggctattaagagatcaaatc |
205 |
Q |
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| T |
35905020 |
aattttgatgagtccaatgttattggtgtaggagggtttggaaaggtttacaagggtgttattgataatggtgttaaagtggctattaagagatcaaatc |
35904921 |
T |
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| Q |
206 |
cacaatcagaacaaggagtaaatgaatttcaaactgaaattgagatgctttcaaagcttagacataaacatttagtgtctttgattggtttttgtgagga |
305 |
Q |
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| T |
35904920 |
cacaatcagaacaaggagtaaatgaatttcaaactgaaattgagatgctttcaaagcttagacataaacatttagtgtctttgattggtttttgtgagga |
35904821 |
T |
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| Q |
306 |
agatgaggaaatgtgtttggtttatgat |
333 |
Q |
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| T |
35904820 |
agatgaggaaatgtgtttggtttatgat |
35904793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 46 - 332
Target Start/End: Original strand, 47624163 - 47624449
Alignment:
| Q |
46 |
gccatggctcaaggactgtgtcgatatttctctttacaagagatgaagcaagcaaccaagaattttgatgagtccaatgttattggtgtaggagggtttg |
145 |
Q |
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| T |
47624163 |
gccatgacccaaggtctatgtcgctatttttcgttacaagagataaagcaagcaaccaacagttttgatgagtccaacgtgattggagttggtggatttg |
47624262 |
T |
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| Q |
146 |
gaaaggtttacaagggtgttattgataatggtgttaaagtggctattaagagatcaaatccacaatcagaacaaggagtaaatgaatttcaaactgaaat |
245 |
Q |
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| T |
47624263 |
gaaaggtttacaagggtgtcattgataatggaatgctagtggcgattaagaggtcaaatccacagtcagaacaaggagtcaatgaattccagaccgagat |
47624362 |
T |
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| Q |
246 |
tgagatgctttcaaagcttagacataaacatttagtgtctttgattggtttttgtgaggaagatgaggaaatgtgtttggtttatga |
332 |
Q |
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| T |
47624363 |
tgagatgctttctaagttgagacacaagcatttggtgtccttgattggattttgcgaggaagataatgagatgtgtttggtttatga |
47624449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 318
Target Start/End: Complemental strand, 13974106 - 13973948
Alignment:
| Q |
160 |
ggtgttattgataatggtgttaaagtggctattaagagatcaaatccacaatcagaacaaggagtaaatgaatttcaaactgaaattgagatgctttcaa |
259 |
Q |
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| T |
13974106 |
ggtgtgattgatgaaggggttcaagttgctgtcaagagaggaaatccacaatcagaacaaggtatcaatgaattccagactgaaatccaaatgttgtcta |
13974007 |
T |
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| Q |
260 |
agcttagacataaacatttagtgtctttgattggtttttgtgaggaagatgaggaaatg |
318 |
Q |
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| T |
13974006 |
agcttagacatagacatttggtttcaatgattggatattgtgatgaaaatgaagaaatg |
13973948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 11380291 - 11380352
Alignment:
| Q |
241 |
gaaattgagatgctttcaaagcttagacataaacatttagtgtctttgattggtttttgtga |
302 |
Q |
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| T |
11380291 |
gaaattgagatgctctcaaaactaagacacagacatcttgtgtctttgattggtttctgtga |
11380352 |
T |
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