View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11240_low_18 (Length: 319)
Name: NF11240_low_18
Description: NF11240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11240_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 22266033 - 22266168
Alignment:
| Q |
26 |
atgtttctacaatattttaaaaacctaataatcatcctcattcattttccttcttttttattaccactacctcagtaaagtaacttcactcatatgattt |
125 |
Q |
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| T |
22266033 |
atgtttctacaacatttcaaaaac-tcataatcatcctcattcatttgcattcttttttattaccactacctcaataatgtaacttcactcatatgattt |
22266131 |
T |
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| Q |
126 |
agcataccttcatgattttattgtgcttagtattgca |
162 |
Q |
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| T |
22266132 |
cgcataccttcatgatctgattgtgcttagcattgca |
22266168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 218 - 282
Target Start/End: Original strand, 22266198 - 22266262
Alignment:
| Q |
218 |
attctcaaactgatttggagtgaccaaaatttgtattttggtcttggatatagtttgatgagcta |
282 |
Q |
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| T |
22266198 |
attctcaaactgatttggagtgaccaaaatctgtatttcggttttggatatagtttgatgagcta |
22266262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 22272343 - 22272395
Alignment:
| Q |
18 |
ctaaccacatgtttctacaatattttaaaaacctaataatcatcctcattcat |
70 |
Q |
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| T |
22272343 |
ctaaccacatgtttctacaatattttaaaaacctaataatcatcctcattcat |
22272395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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