View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11240_low_20 (Length: 300)
Name: NF11240_low_20
Description: NF11240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11240_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 15302087 - 15301801
Alignment:
| Q |
1 |
catacaagtagagtatgtgagcattgtactgtgatgcatttattatgatttgtggattaatattgtgtcactcataataatgtcgtaatgttctagtgat |
100 |
Q |
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| T |
15302087 |
catacaagtagagtatgtgagcattgtattgtgatgcatttattatgatttgtgtattaatattgtgtcactcataataatgtcgtaatgttctaacgat |
15301988 |
T |
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| Q |
101 |
ttgagttgttagtgattttgtttggtgttgactgctgaatatttttaacctatttctacctacgacgatatagttgtagttgtgtgatttaagttgttag |
200 |
Q |
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| T |
15301987 |
aggagttgtttgtgattttgtttggtgttgactgctgagtatttttaacctatttctacct---acgatatagttgtagttgtgtgatttaagttgttag |
15301891 |
T |
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| Q |
201 |
tggtgctatatggtattgtattgggtgtgtttcatctatttgtatgtaacatgtaatttatttatgatgtactcacctcttctatctctg |
290 |
Q |
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| T |
15301890 |
tggtgctatatggtgttgtgctgggtttgtttcatttatttgtacgtaacatgtaatttatttatgatgcactcacctcttatatgtctg |
15301801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 209 - 296
Target Start/End: Complemental strand, 15294695 - 15294608
Alignment:
| Q |
209 |
tatggtattgtattgggtgtgtttcatctatttgtatgtaacatgtaatttatttatgatgtactcacctcttctatctctgcttctc |
296 |
Q |
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| T |
15294695 |
tatggtgttgtattgggtttgtttcatctatttgtacgtaacatgtaatttatttatgatgtactaacctcttctatgtctgtttctc |
15294608 |
T |
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