View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11240_low_25 (Length: 267)
Name: NF11240_low_25
Description: NF11240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11240_low_25 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 46428912 - 46428664
Alignment:
| Q |
17 |
taaagcattctcgcacgagggttcttcattgagatagccctcctgttggtttagaaattgatatttaaggaattcaaatgtgcacaaagaaaccaaattg |
116 |
Q |
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| T |
46428912 |
taaagcattctcgcacgagggttcttcattgagatagccctcctgttggtttagaaattgatatttaaggaattcaaatgtgcacaaagaaaccaaattg |
46428813 |
T |
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| Q |
117 |
aaggaatttaaattgaaatttatttaaaaagcaatgcttaaggccacataaacttagttaagatttccagaagaacttgccttaacaatacgcatggtgt |
216 |
Q |
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| T |
46428812 |
aaggaattcaaattgaaatttatttaaaaagcaatgcttaaggccac--aaacttagttaagatttccagaagaacttgccttaacaatacgcatggtgt |
46428715 |
T |
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| Q |
217 |
cacaatcaaacacatagggagtagtaacacaatcgccattctcattatata |
267 |
Q |
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| T |
46428714 |
cacaatcaaacacatagggagtagtaacacaatcgccattctcattatata |
46428664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 46021884 - 46021819
Alignment:
| Q |
136 |
ttatttaaaaagcaatgcttaaggccacataaacttagttaagatttccagaagaacttgccttaa |
201 |
Q |
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| T |
46021884 |
ttatttaaaaagcaatgctaaaggcctcataaacatagttaagatttccagaagaacttgccttaa |
46021819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 46245708 - 46245773
Alignment:
| Q |
136 |
ttatttaaaaagcaatgcttaaggccacataaacttagttaagatttccagaagaacttgccttaa |
201 |
Q |
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| T |
46245708 |
ttatttcaaaagcaatgctaaaggcctcataaacatagttaagatttccagaagaacttgccttaa |
46245773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 46303526 - 46303583
Alignment:
| Q |
143 |
aaaagcaatgcttaaggccacataaacttagttaagatttccagaagaacttgcctta |
200 |
Q |
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|||||||||| | |||||||||| ||||||||| |||||||||||||||||| ||||| |
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| T |
46303526 |
aaaagcaatgataaaggccacattaacttagttgagatttccagaagaacttccctta |
46303583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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