View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11240_low_27 (Length: 256)
Name: NF11240_low_27
Description: NF11240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11240_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 26955719 - 26955961
Alignment:
| Q |
11 |
cacagaaacatcgtacataaattcccatacaaggaataatctcgatccatacaaattttttggttcattcaatttgttagcaaaagccaaacagacaagt |
110 |
Q |
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| T |
26955719 |
cacagaaacatcgtacataaattcccatacaaggaataatcttgatccatacaaaatttttggttcattcaatttgttagcaaaagccaaacagacaagt |
26955818 |
T |
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| Q |
111 |
agccaagcaaaacaacaaggaccatgaaatctctctgtggtaacctgatcccctgaccagctccacatgttactgccaaactagaaaattgga------- |
203 |
Q |
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| T |
26955819 |
agccaagcaaaacaacaaggaccatgaaatctctctgtggtaacctgatcccctgaccagcaccacatgttactgccaaactagaaaattggaggaaatg |
26955918 |
T |
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| Q |
204 |
ggaaatggatattcttaagatcctaagttttccatttcttagt |
246 |
Q |
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| T |
26955919 |
ggaaatggatattcttaagatcctaagttttccatttcttagt |
26955961 |
T |
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