View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11240_low_28 (Length: 255)
Name: NF11240_low_28
Description: NF11240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11240_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 56 - 234
Target Start/End: Complemental strand, 1176071 - 1175883
Alignment:
| Q |
56 |
gtgatatgtggagatggagaaatgagagagaagagagcgaagggaaagactcgtgtttgtttttcttgcattgataaaataaataa----------taaa |
145 |
Q |
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| T |
1176071 |
gtgatatgtggagatggagaaatgagaaagaagagagcgaagggaaagactcgtgtttgtttttcttgcattgataaaataaataataaataataataaa |
1175972 |
T |
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| Q |
146 |
ggccactgttgctgtgtttttcttgcattaataaaatnnnnnnnntaataacaaatgccatctaggtgtgtgtatatgggtggtagggg |
234 |
Q |
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| T |
1175971 |
ggccactgttgctgtgtttttcttgcattaataaaataaaaaaaataataacaaatgccatctaggtgtgtgtatatgggtggtagggg |
1175883 |
T |
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Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 5197068 - 5196940
Alignment:
| Q |
17 |
gaagaatgggggtggcggtggtggtgagtggtggtgttagtgatatgtggagatggagaaatgagagagaagagagcgaagggaaagactcgtgtttgtt |
116 |
Q |
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| T |
5197068 |
gaagaataggggtggcggtggtggtgagtggtggtgttagtgatctgtggagatggagaaatgagagagaagagagcgaagggaaagacttgtgtttgtt |
5196969 |
T |
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| Q |
117 |
tttcttgcattgataaaataaataataaa |
145 |
Q |
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| T |
5196968 |
tttcttgcattgataaaataaataataaa |
5196940 |
T |
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Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 44 - 234
Target Start/End: Original strand, 55038980 - 55039179
Alignment:
| Q |
44 |
gtggtggtgttagtgatatgtggagatggagaaatgagagagaagagagcgaagggaaagactcgtgtttgtttttcttgcattgataaaata------- |
136 |
Q |
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| T |
55038980 |
gtggtggtgttagtgatctgtggagatggagaaatgagagagaagagagcgaagggaaagactcgtgtttgtttttcttgaattgataaaataaataata |
55039079 |
T |
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| Q |
137 |
---aataataaaggccactgttgctgtgtttttcttgcattaataaaatnnnnnnnntaataacaaatgccatctaggtgtgtgtatatgggtggtaggg |
233 |
Q |
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| T |
55039080 |
aataataataaatgccactgttgctgggtttttcttacattaataaaat-aaaaaaataataacaaatgccatttaggtgtgtgtatatgggtggtaggg |
55039178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 44 - 233
Target Start/End: Complemental strand, 8004252 - 8004057
Alignment:
| Q |
44 |
gtggtggtgttagtgatatgtggagatggagaaatgagagagaagagagcgaagggaaagactcgtgtttgtttttcttgcattgataaaataaataa-- |
141 |
Q |
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|||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8004252 |
gtggtggtgttaatgatttgtggagatgaagaaatgagagagaagagagcgaagggaaagactcgtgtttgtttttcttgcattgataaaataaataata |
8004153 |
T |
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| Q |
142 |
--------taaaggccactgttgctgtgtttttcttgcattaataaaatnnnnnnnntaataacaaatgccatctaggtgtgtgtatatgggtggtaggg |
233 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||| |
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| T |
8004152 |
aataataataaatgccactgttgctgtg-ttttcttgcattaataaaat-aaaaaaataataacaaatgccatcta--cgtgtgtatatggatggtaggg |
8004057 |
T |
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