View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11240_low_29 (Length: 254)

Name: NF11240_low_29
Description: NF11240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11240_low_29
NF11240_low_29
[»] chr1 (4 HSPs)
chr1 (36-240)||(34184632-34184850)
chr1 (141-189)||(24462267-24462315)
chr1 (149-189)||(30847725-30847765)
chr1 (140-176)||(32638456-32638492)
[»] chr2 (1 HSPs)
chr2 (149-189)||(18512147-18512187)
[»] chr3 (2 HSPs)
chr3 (154-185)||(24564491-24564522)
chr3 (128-189)||(14832113-14832174)
[»] scaffold0011 (1 HSPs)
scaffold0011 (151-189)||(240028-240066)
[»] chr5 (3 HSPs)
chr5 (151-189)||(21319952-21319990)
chr5 (149-187)||(38784822-38784860)
chr5 (151-183)||(32932239-32932271)
[»] chr8 (1 HSPs)
chr8 (140-189)||(25161239-25161288)
[»] chr7 (2 HSPs)
chr7 (140-189)||(12843171-12843220)
chr7 (141-189)||(1885587-1885635)
[»] chr6 (2 HSPs)
chr6 (140-189)||(9024172-9024221)
chr6 (151-183)||(27661756-27661788)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 36 - 240
Target Start/End: Complemental strand, 34184850 - 34184632
Alignment:
Q  36 tcacaactaatttggagaattgtttatatgccacaacaaaaagaaggaaagcaacgagtctgcgattgctt----------------tatgattaaatgc 119  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| | |                |||||||||||||    
T  34184850 tcacaactaatttggagaattgtttatatgccacaacaaaa-gaaggaaagtaacgagtctgcgattacctctattgtacagatacttatgattaaatgc 34184752  T
Q  120 gtgttttggtgtccaatacagacacgacgctgacacatgtgattacattgaattatattattttttcaaannnnnnnnnnatatcgacatgtctgtatca 219  Q
    ||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||| || ||          ||||||||||||||| ||||    
T  34184751 gtgttttggtgtttaacacagacacgacgctgacacatgtgattacattgaattatattattttctc-aagattttattcatatcgacatgtctggatca 34184653  T
Q  220 tattcaacgactatgtctgtg 240  Q
    ||| | |||||||||||||||    
T  34184652 tatccgacgactatgtctgtg 34184632  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 24462267 - 24462315
Alignment:
Q  141 acacgacgctgacacatgtgattacattgaattatattattttttcaaa 189  Q
    ||||||| |||| || ||||||||||||||||||| | |||||||||||    
T  24462267 acacgacactgaaacttgtgattacattgaattatgtcattttttcaaa 24462315  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 30847725 - 30847765
Alignment:
Q  149 ctgacacatgtgattacattgaattatattattttttcaaa 189  Q
    ||||||||| ||||||||||||||||| | |||||||||||    
T  30847725 ctgacacatatgattacattgaattatgtcattttttcaaa 30847765  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 176
Target Start/End: Complemental strand, 32638492 - 32638456
Alignment:
Q  140 gacacgacgctgacacatgtgattacattgaattata 176  Q
    |||||||| |||||||||||||||||||| |||||||    
T  32638492 gacacgacactgacacatgtgattacattcaattata 32638456  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 18512147 - 18512187
Alignment:
Q  149 ctgacacatgtgattacattgaattatattattttttcaaa 189  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  18512147 ctgacacatgtgattacattgaattatattattttctcaaa 18512187  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 185
Target Start/End: Complemental strand, 24564522 - 24564491
Alignment:
Q  154 acatgtgattacattgaattatattatttttt 185  Q
    ||||||||||||||||||||||||||||||||    
T  24564522 acatgtgattacattgaattatattatttttt 24564491  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 14832174 - 14832113
Alignment:
Q  128 gtgtccaatacagacacgacgctgacacatgtgattacattgaattatattattttttcaaa 189  Q
    |||||| |||| |||||||| ||||||| ||| |||||||||| |||| | |||||||||||    
T  14832174 gtgtccgataccgacacgacactgacacttgtaattacattgagttatgtgattttttcaaa 14832113  T

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Target: scaffold0011 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 240028 - 240066
Alignment:
Q  151 gacacatgtgattacattgaattatattattttttcaaa 189  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  240028 gacacatatgattacattgaattatattattttctcaaa 240066  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 21319952 - 21319990
Alignment:
Q  151 gacacatgtgattacattgaattatattattttttcaaa 189  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  21319952 gacacttgtgattacattgaattatatcattttttcaaa 21319990  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 38784860 - 38784822
Alignment:
Q  149 ctgacacatgtgattacattgaattatattattttttca 187  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  38784860 ctgacacttgtgattacattgaattatatcattttttca 38784822  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 32932239 - 32932271
Alignment:
Q  151 gacacatgtgattacattgaattatattatttt 183  Q
    ||||||||||||||||||| |||||||||||||    
T  32932239 gacacatgtgattacattggattatattatttt 32932271  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 25161288 - 25161239
Alignment:
Q  140 gacacgacgctgacacatgtgattacattgaattatattattttttcaaa 189  Q
    |||||||| |||||||||||||| ||||| |||||||  |||||||||||    
T  25161288 gacacgacactgacacatgtgatgacattcaattataccattttttcaaa 25161239  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 12843171 - 12843220
Alignment:
Q  140 gacacgacgctgacacatgtgattacattgaattatattattttttcaaa 189  Q
    |||||||| ||||||||||| ||||||||||||||| | ||||| |||||    
T  12843171 gacacgacactgacacatgtaattacattgaattatgtaattttatcaaa 12843220  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 1885635 - 1885587
Alignment:
Q  141 acacgacgctgacacatgtgattacattgaattatattattttttcaaa 189  Q
    ||||||| | ||||| ||||||||||||||||||| | |||||||||||    
T  1885635 acacgacaccgacacttgtgattacattgaattatgtcattttttcaaa 1885587  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 9024172 - 9024221
Alignment:
Q  140 gacacgacgctgacacatgtgattacattgaattatattattttttcaaa 189  Q
    |||||||| ||||||||| ||||||||||||||||| | ||||| |||||    
T  9024172 gacacgacactgacacatatgattacattgaattatgtcattttctcaaa 9024221  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 27661788 - 27661756
Alignment:
Q  151 gacacatgtgattacattgaattatattatttt 183  Q
    ||||||||||||||||||||| |||||||||||    
T  27661788 gacacatgtgattacattgaaatatattatttt 27661756  T

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