View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11240_low_31 (Length: 250)
Name: NF11240_low_31
Description: NF11240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11240_low_31 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 16216010 - 16215773
Alignment:
| Q |
13 |
gagacgagatttgataagccgaaaaaatcaatgatgcaactaggagtattatttggtattattggaggttttgttgtaattgtagggcttttgattctac |
112 |
Q |
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| T |
16216010 |
gagacgagatttgataagccgaaaaaatcaatgatgcaactaggagtattatttggtattattggaggttttgttgtaattgtagggcttttgattctac |
16215911 |
T |
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| Q |
113 |
tctttctgttcattttgagaaagtctaaagcagaaagagaagatactaaaatagatcatagatctgttaatatttcaagagaatcaagaccaaatattta |
212 |
Q |
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| T |
16215910 |
tctttctgttcattttgagaaagtctaaagcagaaagagaagatagtaaaatagatcatagatctgttgatatttcaagagaatcaagaccaaatattta |
16215811 |
T |
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| Q |
213 |
tgcaagtaaggccacaatttggatcatatttttcattt |
250 |
Q |
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| T |
16215810 |
tgcaagtaaggccacaatttggatcatatttttcattt |
16215773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 16963265 - 16963066
Alignment:
| Q |
17 |
cgagatttgataagccgaaaaaatcaatgatgcaactaggagtattatttggtattattggaggttttgttgtaattgtagggcttttgattctactctt |
116 |
Q |
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| T |
16963265 |
cgagatttgagaagccgaaaaaatcaatgatgcagctaggagtattatttggtattattggaggttttgttggaattgtagggcttttgattctactctt |
16963166 |
T |
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| Q |
117 |
tctgttcattttgagaaagtctaaagcagaaagagaagatactaaaatagatcatagatctgttaatatttcaagagaatcaagaccaaatatttatgca |
216 |
Q |
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| T |
16963165 |
tctgttcattttgagaaagtccaaagcagaaagagaag---------------atagatctgttgatatttcaagagaatcaagactaaatatttatgca |
16963081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 48892120 - 48892031
Alignment:
| Q |
48 |
gcaactaggagtattatttggtattattggaggttttgttgtaattgtagggcttttgattctactctttctgttcattttgagaaagtc |
137 |
Q |
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| T |
48892120 |
gcaactaggactaatacttgatactattggaggttttgtaggaattgcagggcttttgattatattttttctgttcattttgagaaagtc |
48892031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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