View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11240_low_32 (Length: 247)

Name: NF11240_low_32
Description: NF11240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11240_low_32
NF11240_low_32
[»] chr3 (11 HSPs)
chr3 (3-96)||(6935141-6935233)
chr3 (107-177)||(6939013-6939083)
chr3 (28-102)||(50302103-50302176)
chr3 (20-83)||(6525438-6525500)
chr3 (177-213)||(6526944-6526980)
chr3 (23-83)||(6799224-6799283)
chr3 (20-83)||(6410638-6410700)
chr3 (174-213)||(6558187-6558226)
chr3 (177-216)||(6789001-6789040)
chr3 (107-148)||(6549838-6549879)
chr3 (177-206)||(6848532-6848561)
[»] scaffold0425 (1 HSPs)
scaffold0425 (177-213)||(11651-11687)


Alignment Details
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 6935141 - 6935233
Alignment:
Q  3 tcctacaatgagattcagattttgttgaagttcaaaaatataaatttggacaaaattgccacaattctaatcaaattcacccgaaattcaaaca 96  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||    
T  6935141 tcctacaatgtgattcaaattttgttgaagttcaaaaatataaatttggacaaaattgccacaattct-atcaaattcacccggaatccaaaca 6935233  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 107 - 177
Target Start/End: Original strand, 6939013 - 6939083
Alignment:
Q  107 taaattagagtgatgccttgcagaatggttctgtgttacattgattgattataacaggccagtcttattga 177  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6939013 taaattagagtgatgccttccagaatggttctgtgttacattgattgattataacaggccagtcttattga 6939083  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 50302176 - 50302103
Alignment:
Q  28 tgaagttcaaaaatataaatttggacaaaattgccacaattctaatcaaattcacccgaaattcaaacatgcaca 102  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||| || ||  ||||||||||||    
T  50302176 tgaagttcaaaaatataaattttgacaaaattgccacaattc-aatcaaattcacacggaacccaaacatgcaca 50302103  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 6525500 - 6525438
Alignment:
Q  20 gattttgttgaagttcaaaaatataaatttggacaaaattgccacaattctaatcaaattcacc 83  Q
    |||||||||||||||||||| ||||||||| ||||||||| |||| ||||| ||||||||||||    
T  6525500 gattttgttgaagttcaaaagtataaattttgacaaaattaccacgattct-atcaaattcacc 6525438  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 6526980 - 6526944
Alignment:
Q  177 acaacaaagtggcatgtcattcaattttttatcactt 213  Q
    |||||||||||||||||||||||||||||||||||||    
T  6526980 acaacaaagtggcatgtcattcaattttttatcactt 6526944  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 6799283 - 6799224
Alignment:
Q  23 tttgttgaagttcaaaaatataaatttggacaaaattgccacaattctaatcaaattcacc 83  Q
    ||||||||||||||||| || |||||| ||||||||| |||||||||| ||||||||||||    
T  6799283 tttgttgaagttcaaaagtacaaattttgacaaaattaccacaattct-atcaaattcacc 6799224  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 6410700 - 6410638
Alignment:
Q  20 gattttgttgaagttcaaaaatataaatttggacaaaattgccacaattctaatcaaattcacc 83  Q
    |||||||||||| ||||||| ||||||||| |||||||||  ||||||||| ||||||||||||    
T  6410700 gattttgttgaaattcaaaagtataaattttgacaaaattatcacaattct-atcaaattcacc 6410638  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 6558226 - 6558187
Alignment:
Q  174 ttgacaacaaagtggcatgtcattcaattttttatcactt 213  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  6558226 ttgacaacaaggtggcatgtcattcaattttttatcactt 6558187  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 6789040 - 6789001
Alignment:
Q  177 acaacaaagtggcatgtcattcaattttttatcacttctt 216  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  6789040 acaacaaagtggcatgtcattcaattttttatgacttctt 6789001  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 6549879 - 6549838
Alignment:
Q  107 taaattagagtgatgccttgcagaatggttctgtgttacatt 148  Q
    |||||| ||||  |||||||||||||||||||||||||||||    
T  6549879 taaattggagtagtgccttgcagaatggttctgtgttacatt 6549838  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 206
Target Start/End: Complemental strand, 6848561 - 6848532
Alignment:
Q  177 acaacaaagtggcatgtcattcaatttttt 206  Q
    ||||||||||||||||||||||||||||||    
T  6848561 acaacaaagtggcatgtcattcaatttttt 6848532  T

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Target: scaffold0425 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 11687 - 11651
Alignment:
Q  177 acaacaaagtggcatgtcattcaattttttatcactt 213  Q
    |||||||||||||||||||||||||||||||||||||    
T  11687 acaacaaagtggcatgtcattcaattttttatcactt 11651  T

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