View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11240_low_36 (Length: 224)
Name: NF11240_low_36
Description: NF11240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11240_low_36 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 34092379 - 34092602
Alignment:
| Q |
1 |
atatacaatctcctttgaaaacaaatcacatcatatacagactaagttttctattttttctaccaaaaattatttaatacaaggttaatcaaaatattta |
100 |
Q |
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| T |
34092379 |
atatacaatctcctttgaaaacaaatcacatcatatacagactaagttttctattttttctaccaaaaattatttaatacaaggttaatcaaaatattta |
34092478 |
T |
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| Q |
101 |
tttcatctttaacataacatcgnnnnnnnaaaatatctttcaaatttaattaaaacatcaatattggttttnnnnnnntctttaacaagcctacaataaa |
200 |
Q |
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| T |
34092479 |
tttaatctttaacataacatcgtttttttaaaatatctttcaaatttaattaaaacatcaaaattggttttaaaaaaatctttaacaagcctacaataaa |
34092578 |
T |
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| Q |
201 |
agattttttaaattaattataatt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
34092579 |
agattttttaaattaattataatt |
34092602 |
T |
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