View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11240_low_37 (Length: 217)

Name: NF11240_low_37
Description: NF11240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11240_low_37
NF11240_low_37
[»] scaffold0238 (1 HSPs)
scaffold0238 (1-209)||(26310-26527)
[»] chr1 (11 HSPs)
chr1 (1-204)||(13614521-13614733)
chr1 (1-209)||(20508228-20508445)
chr1 (36-202)||(13438928-13439094)
chr1 (34-204)||(13554851-13555021)
chr1 (34-211)||(15893650-15893827)
chr1 (45-204)||(13689022-13689181)
chr1 (38-204)||(19134070-19134236)
chr1 (38-204)||(20380205-20380371)
chr1 (38-204)||(13519489-13519655)
chr1 (104-204)||(16446194-16446294)
chr1 (34-71)||(16446318-16446355)
[»] chr6 (1 HSPs)
chr6 (34-204)||(22271167-22271337)
[»] scaffold0006 (2 HSPs)
scaffold0006 (45-209)||(61817-61981)
scaffold0006 (38-202)||(177344-177508)
[»] scaffold0069 (2 HSPs)
scaffold0069 (38-204)||(59994-60160)
scaffold0069 (38-201)||(44898-45061)
[»] chr8 (1 HSPs)
chr8 (38-204)||(20766542-20766708)
[»] chr2 (1 HSPs)
chr2 (34-204)||(38049000-38049170)


Alignment Details
Target: scaffold0238 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 26527 - 26310
Alignment:
Q  1 ccaattacttttttgaatgaatatcttcacaaga---------atcttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaag 91  Q
    ||||||||||||||||||||||||||||||||||         ||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||    
T  26527 ccaattacttttttgaatgaatatcttcacaagatatttcctaatcttgaagcatttcaagtgcgtaatagttcctttgacgtattgttcccaactaaag 26428  T
Q  92 gaaccactgatcatctcagtatgcaaatttcaaagcaaataagaaaattatggctttttgaattggaaaagctcgagcatatatggcaggaagactttcc 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  26427 gaaccactgatcatctcagtatgcaaatttcaaagcaaataagaaaattatggctttttgaattggaaaagctcgagcacatctggcaggaagactttcc 26328  T
Q  192 actggatcatcctttgct 209  Q
    ||||||||||||| ||||    
T  26327 actggatcatcctctgct 26310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 13614521 - 13614733
Alignment:
Q  1 ccaattacttttttgaatgaatatcttcacaaga---------atcttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaag 91  Q
    ||||||||||||||||||||||||||||||||||         ||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||    
T  13614521 ccaattacttttttgaatgaatatcttcacaagatatttcctaatcttgaaacatttcaagtgcgtaatagttcctttaacgtattgttcccaactaaag 13614620  T
Q  92 gaaccactgatcatctcagtatgcaaatttcaaagcaaataagaaaattatggctttttgaattggaaaagctcgagcatatatggcaggaagactttcc 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  13614621 gaaccactgatcatctcagtatgcaaatttcaaagcaaataagaaaattatggctttttgaattggaaaagctcgagcacatctggcaggaagactttcc 13614720  T
Q  192 actggatcatcct 204  Q
    |||| ||||||||    
T  13614721 actgaatcatcct 13614733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 20508445 - 20508228
Alignment:
Q  1 ccaattacttttttgaatgaatatcttcacaaga---------atcttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaag 91  Q
    ||||||||||||||||||||| ||||||||||||         ||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||    
T  20508445 ccaattacttttttgaatgaacatcttcacaagatatttcctaatcttgaaacatttcaagtgcgtaatagttcctttgtcgtattgttcccaactaaag 20508346  T
Q  92 gaaccactgatcatctcagtatgcaaatttcaaagcaaataagaaaattatggctttttgaattggaaaagctcgagcatatatggcaggaagactttcc 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||    
T  20508345 gaaccactgatcatctcagtatgcaaatttcaaagcaaataagaaaattatggctttttgaattggaaaagctcgagcacatctggcaggaaaactttcc 20508246  T
Q  192 actggatcatcctttgct 209  Q
    ||||||||||||| ||||    
T  20508245 actggatcatcctctgct 20508228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 36 - 202
Target Start/End: Original strand, 13438928 - 13439094
Alignment:
Q  36 tcttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataaga 135  Q
    |||||||| ||||||||||||||||||||||||||    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13438928 tcttgaaacatttcaagtgcgtaatagttcttttgcaacattgttccccactaaaggaaccactgatcatctcagtatgcaactttcaaagcaaataaga 13439027  T
Q  136 aaattatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatc 202  Q
    || || |||||||||||||||||||||||| ||||  | ||||||| |||||||||| |||||||||    
T  13439028 aagttgtggctttttgaattggaaaagctcaagcacgtttggcaggtagactttccattggatcatc 13439094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 34 - 204
Target Start/End: Original strand, 13554851 - 13555021
Alignment:
Q  34 aatcttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataa 133  Q
    |||||||||| ||||||||||||||| ||||| |||||  |||||||||| |||||| |||| |||||||||||||||||||||||||||||| ||||||    
T  13554851 aatcttgaaacatttcaagtgcgtaacagttcctttgaaatattgttccccactaaaagaacaactgatcatctcagtatgcaaatttcaaagaaaataa 13554950  T
Q  134 gaaaattatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatcct 204  Q
    |||| || ||||||||||||||||||||||||||| | || ||||| ||||| |||||| |||||||||||    
T  13554951 gaaatttgtggctttttgaattggaaaagctcgagtacatctggcatgaagattttccattggatcatcct 13555021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 34 - 211
Target Start/End: Complemental strand, 15893827 - 15893650
Alignment:
Q  34 aatcttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataa 133  Q
    |||||||||| |||||| ||  ||||| |||| |||||  |||||||||| ||||||||||||||| ||||||||| || ||||||||||| ||||||||    
T  15893827 aatcttgaaacatttcatgtttgtaatggttcctttgaaatattgttccccactaaaggaaccacttatcatctcactacgcaaatttcaatgcaaataa 15893728  T
Q  134 gaaaattatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatcctttgcttc 211  Q
    |||| || ||| ||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| ||||||    
T  15893727 gaaatttgtggatttttgaattggaaaagctcgagcacatatggcaggaaaactttccaccggatcatcctctgcttc 15893650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 45 - 204
Target Start/End: Original strand, 13689022 - 13689181
Alignment:
Q  45 atttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataagaaaattatgg 144  Q
    ||||||||| ||||||||||| |||||  |||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||| ||||  ||   |    
T  13689022 atttcaagtccgtaatagttcctttgaaatattgttccccactaaaggagccactgatcatctcaatatgcaaatttcaaagcaaatgagaatgttgatg 13689121  T
Q  145 ctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatcct 204  Q
    |||||||||||||||||||||||||| || ||||||||||| |||||| |||||||||||    
T  13689122 ctttttgaattggaaaagctcgagcacatctggcaggaagaatttccattggatcatcct 13689181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 38 - 204
Target Start/End: Complemental strand, 19134236 - 19134070
Alignment:
Q  38 ttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataagaaa 137  Q
    |||||| |||||||||||||||||||||||||||   ||||| |||  |||||||| ||||   | |||||||||||||||| ||||| |||||||||||    
T  19134236 ttgaaacatttcaagtgcgtaatagttcttttgaaacattgtaccccgctaaaggagccacaagttatctcagtatgcaaatgtcaaatcaaataagaaa 19134137  T
Q  138 attatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatcct 204  Q
     || |||||||||||||||||||||||| ||||  |||||||||||||||||||| |||||||||||    
T  19134136 gttgtggctttttgaattggaaaagctcaagcacgtatggcaggaagactttccattggatcatcct 19134070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 38 - 204
Target Start/End: Original strand, 20380205 - 20380371
Alignment:
Q  38 ttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataagaaa 137  Q
    |||||| |||||||||||||||||||||||||||   ||||||| | ||||||||||||||   | |||||||||||||||  ||||| |||||||||||    
T  20380205 ttgaaacatttcaagtgcgtaatagttcttttgaaacattgttcaccactaaaggaaccacaagttatctcagtatgcaaacgtcaaatcaaataagaaa 20380304  T
Q  138 attatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatcct 204  Q
     || ||||||||||||||||| |||||| |||| || |||||||||||||||||| |||||||||||    
T  20380305 gttgtggctttttgaattggacaagctcaagcacatctggcaggaagactttccattggatcatcct 20380371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 38 - 204
Target Start/End: Original strand, 13519489 - 13519655
Alignment:
Q  38 ttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataagaaa 137  Q
    |||||| |||||||||||||||||||||||||||   ||||||||| ||||||||||||||   | |||| ||| ||||||| ||||| |||||||||||    
T  13519489 ttgaaacatttcaagtgcgtaatagttcttttgaaacattgttccccactaaaggaaccacaagttatcttagtttgcaaatgtcaaatcaaataagaaa 13519588  T
Q  138 attatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatcct 204  Q
     || |   |||||||| |||||||||| || || || ||||||||||||||||||||| ||||||||    
T  13519589 gttgtttttttttgaaatggaaaagctagaacacatttggcaggaagactttccactgaatcatcct 13519655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 104 - 204
Target Start/End: Complemental strand, 16446294 - 16446194
Alignment:
Q  104 atctcagtatgcaaatttcaaagcaaataagaaaattatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatcc 203  Q
    |||||| | |||||| |||||||||||||||||| || |||||||||||||||||||| ||| |||| || |||||||||| ||| ||| ||||||||||    
T  16446294 atctcaatttgcaaacttcaaagcaaataagaaacttgtggctttttgaattggaaaatctcaagcacatctggcaggaagtcttcccattggatcatcc 16446195  T
Q  204 t 204  Q
    |    
T  16446194 t 16446194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 16446355 - 16446318
Alignment:
Q  34 aatcttgaaatatttcaagtgcgtaatagttcttttga 71  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  16446355 aatcttgaaacatttcaagtgcgtaatagttcatttga 16446318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 34 - 204
Target Start/End: Complemental strand, 22271337 - 22271167
Alignment:
Q  34 aatcttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataa 133  Q
    |||||||||| ||||||||||||||||||||| |||||  |||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  22271337 aatcttgaaacatttcaagtgcgtaatagttcctttgaaatattgttccccactaaaggaaccactgatcatctcagtatgcaactttcaaggcaaataa 22271238  T
Q  134 gaaaattatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatcct 204  Q
    |||| || ||||||||||| |||||||| ||| ||||  ||||||||| |||||||||| |||||||||||    
T  22271237 gaaagttgtggctttttgatttggaaaatctcaagcacgtatggcaggtagactttccattggatcatcct 22271167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 45 - 209
Target Start/End: Original strand, 61817 - 61981
Alignment:
Q  45 atttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataagaaaattatgg 144  Q
    ||||||||| ||||||||||| |||||  |||||||||| ||||||||| ||||||||||||||| |||| |||||||||||||||| ||||  ||   |    
T  61817 atttcaagtccgtaatagttcctttgaaatattgttccccactaaaggagccactgatcatctcaatatgaaaatttcaaagcaaatgagaatgttgatg 61916  T
Q  145 ctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatcctttgct 209  Q
    ||||||||||||||||||||||||  ||||||||| |||||||||||| ||||||||||| ||||    
T  61917 ctttttgaattggaaaagctcgagtttatatggcatgaagactttccattggatcatcctctgct 61981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 38 - 202
Target Start/End: Original strand, 177344 - 177508
Alignment:
Q  38 ttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataagaaa 137  Q
    |||||| |||||||||||||||||||||||||||   ||||||||| ||||||||| |||    | |||||||||||||||| ||||| |||||||||||    
T  177344 ttgaaacatttcaagtgcgtaatagttcttttgaaacattgttccccactaaaggagccagaagttatctcagtatgcaaatgtcaaatcaaataagaaa 177443  T
Q  138 attatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatc 202  Q
      | ||||||||||||||||| |||||| |||| || ||||||||||| |||||| |||||||||    
T  177444 gatgtggctttttgaattggacaagctcaagcacatctggcaggaagattttccattggatcatc 177508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 38 - 204
Target Start/End: Original strand, 59994 - 60160
Alignment:
Q  38 ttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataagaaa 137  Q
    |||||| |||||||||||||||||||||||||||   ||||||| | ||||||||||||||   | |||||||||||||||  ||||| |||||||||||    
T  59994 ttgaaacatttcaagtgcgtaatagttcttttgaaacattgttcaccactaaaggaaccacaagttatctcagtatgcaaacgtcaaatcaaataagaaa 60093  T
Q  138 attatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatcct 204  Q
     || ||||||||||||||||| |||||| |||| || |||||||||||||||||| |||||||||||    
T  60094 gttgtggctttttgaattggacaagctcaagcacatctggcaggaagactttccattggatcatcct 60160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 38 - 201
Target Start/End: Original strand, 44898 - 45061
Alignment:
Q  38 ttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataagaaa 137  Q
    |||||| |||| ||||| ||||||||||||||||   ||||||||| ||||||||| ||||   | |||||||||||||||  ||||| |||||||||||    
T  44898 ttgaaacatttaaagtgtgtaatagttcttttgaaacattgttccccactaaaggagccacaagttatctcagtatgcaaacgtcaaatcaaataagaaa 44997  T
Q  138 attatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcat 201  Q
     || ||||||||||||||||| |||||| ||||  | |||||||||||||||||| ||||||||    
T  44998 gttgtggctttttgaattggacaagctcaagcacgtctggcaggaagactttccattggatcat 45061  T

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Target: chr8 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 38 - 204
Target Start/End: Complemental strand, 20766708 - 20766542
Alignment:
Q  38 ttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataagaaa 137  Q
    |||||| |||||||||||||||||||||||||||   |||||||||  |||||||| ||||   | |||||||||||||||| ||||| |||||||||||    
T  20766708 ttgaaacatttcaagtgcgtaatagttcttttgaaacattgttccccgctaaaggagccacaagttatctcagtatgcaaatgtcaaatcaaataagaaa 20766609  T
Q  138 attatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatcct 204  Q
     || ||||||||||||||||| |||||| | ||| | |||||||||||||||||| ||||| |||||    
T  20766608 tttgtggctttttgaattggacaagctcaaccatgtctggcaggaagactttccattggattatcct 20766542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 34 - 204
Target Start/End: Complemental strand, 38049170 - 38049000
Alignment:
Q  34 aatcttgaaatatttcaagtgcgtaatagttcttttgacgtattgttcccaactaaaggaaccactgatcatctcagtatgcaaatttcaaagcaaataa 133  Q
    |||||||||| |||||||||||||||||||||||||||   ||||||||| ||||||| |||||| | | ||||||||| |||||| | ||| |||||||    
T  38049170 aatcttgaaacatttcaagtgcgtaatagttcttttgaaacattgttccctactaaagtaaccacagcttatctcagtaagcaaatgttaaatcaaataa 38049071  T
Q  134 gaaaattatggctttttgaattggaaaagctcgagcatatatggcaggaagactttccactggatcatcct 204  Q
    |||  ||    |||||||| |||||||||||| ||||  | |||||||||||||||||| |||| ||||||    
T  38049070 gaatgttgattctttttgatttggaaaagctcaagcacgtctggcaggaagactttccattggaccatcct 38049000  T

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