View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11240_low_5 (Length: 620)
Name: NF11240_low_5
Description: NF11240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11240_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 369 - 606
Target Start/End: Complemental strand, 37841588 - 37841351
Alignment:
| Q |
369 |
aactacaaaacccaccctttgaggtcattcggacatgagagttgttgttgaacgaccaaaacagatgcactgctattaagatcgggtgaagcaagaaaat |
468 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37841588 |
aactacaaaacccaccctttgaggtcattcgaacatgagagttgttgttgaacaaccaaaacagatgcactactattaagatcgggtgaagcaagaaaat |
37841489 |
T |
|
| Q |
469 |
caccaatagctccaagttctggaaattcactccattctgccaatccatctgtttgaggagattgagtttcatgtcttctcccaactatnnnnnnntcatg |
568 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37841488 |
caccaatagctccaagttctggaaattcactccattctgccaatccatctgtttgaggagattgagtttcatgtcttctcccaactataaaaaaatcatg |
37841389 |
T |
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| Q |
569 |
ttcattcattatctcacgtagaaaagatgccgtctctg |
606 |
Q |
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||||||||||||||||||||||||||||||||| |||| |
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| T |
37841388 |
ttcattcattatctcacgtagaaaagatgccgtttctg |
37841351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 37841954 - 37841719
Alignment:
| Q |
19 |
agggagtaatgtgttct-ggttttgtaataatgatatagaatatttgtagacgtttattttacttgaggaacaaaattgtgttgtacgtttttctcaata |
117 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37841954 |
agggagtaatgtgttcttggttttgtaataatgatatagaatatttgtagacgtttattttacttgaggaacaaaattgtgttgcacgtttttctcaata |
37841855 |
T |
|
| Q |
118 |
agtagaatgaatttgtattttgtaacnnnnnnngagagaatgaatttgtatttgttctcttctatttacatttctttgttccatgcaactaatttctttt |
217 |
Q |
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| T |
37841854 |
agtagaatgaatttgtattttgtaacaaaaaaagagagaatgaatttgtatttgttctcttctatatacatttctttgttccatgcaactaatttctttc |
37841755 |
T |
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| Q |
218 |
ctttcaatcatcatttattctcatacacattactat |
253 |
Q |
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| T |
37841754 |
atttcaatcatcatttattctcatacacattactat |
37841719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 368 - 439
Target Start/End: Complemental strand, 37845365 - 37845294
Alignment:
| Q |
368 |
caactacaaaacccaccctttgaggtcattcggacatgagagttgttgttgaacgaccaaaacagatgcact |
439 |
Q |
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| T |
37845365 |
caactacaaaatccaccctttaaggtcattcgtgtgtgagagttgttgttgcacaaccaaaacaaatgcact |
37845294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 364 - 598
Target Start/End: Original strand, 38380666 - 38380900
Alignment:
| Q |
364 |
ttgacaactacaaaacccaccctttgaggtcattcggacatgagagttgttgttgaacgaccaaaacagatgcactgctattaagatcgggtgaagcaag |
463 |
Q |
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||||||||||||||| ||||||||| |||||||||| | ||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
38380666 |
ttgacaactacaaaatccaccctttaaggtcattcgtgcgtgagagttgttgttgcacaaccaaaacagatgcactactattaagatcaggtgaagcaag |
38380765 |
T |
|
| Q |
464 |
aaaatcaccaatagctccaagttctggaaattcactccattctgccaatccatctgtttgaggagattgagtttcatgtcttctcccaactatnnnnnnn |
563 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38380766 |
aaaatcaccaatagcaccaagttctggaaattcactccattctgctaatccatcagtttgaggagattgagtttcatgtcttctcccaactataaagaaa |
38380865 |
T |
|
| Q |
564 |
tcatgttcattcattatctcacgtagaaaagatgc |
598 |
Q |
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|||||||| |||| |||||||||||||||||||| |
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| T |
38380866 |
tcatgttcgttcacaatctcacgtagaaaagatgc |
38380900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 364 - 598
Target Start/End: Original strand, 38389532 - 38389766
Alignment:
| Q |
364 |
ttgacaactacaaaacccaccctttgaggtcattcggacatgagagttgttgttgaacgaccaaaacagatgcactgctattaagatcgggtgaagcaag |
463 |
Q |
| |
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||||||||||||||| ||||| ||| |||||||| | | |||||||||||| || || ||||||||||||||| | ||||||||||| ||||||||||| |
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| T |
38389532 |
ttgacaactacaaaatccaccttttaaggtcatttgcgcgtgagagttgttgctgcacaaccaaaacagatgcattactattaagatcaggtgaagcaag |
38389631 |
T |
|
| Q |
464 |
aaaatcaccaatagctccaagttctggaaattcactccattctgccaatccatctgtttgaggagattgagtttcatgtcttctcccaactatnnnnnnn |
563 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
38389632 |
aaaatcaccaatagcaccaagttctggaaattcactccattctgctaatccatcggtttgaggatattgagtttcatgtcttctcccaactataaagaaa |
38389731 |
T |
|
| Q |
564 |
tcatgttcattcattatctcacgtagaaaagatgc |
598 |
Q |
| |
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|||||||| |||| |||||||||||||||||||| |
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| T |
38389732 |
tcatgttcgttcacaatctcacgtagaaaagatgc |
38389766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 408 - 598
Target Start/End: Original strand, 38398339 - 38398529
Alignment:
| Q |
408 |
agttgttgttgaacgaccaaaacagatgcactgctattaagatcgggtgaagcaagaaaatcaccaatagctccaagttctggaaattcactccattctg |
507 |
Q |
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||||||||||| || ||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
38398339 |
agttgttgttgcacaaccaaaacagatgcactactattaagatcaggtgaaacaagaaaatcaccaatagcaccgagttctggaaattcactccattctg |
38398438 |
T |
|
| Q |
508 |
ccaatccatctgtttgaggagattgagtttcatgtcttctcccaactatnnnnnnntcatgttcattcattatctcacgtagaaaagatgc |
598 |
Q |
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| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||| |
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| T |
38398439 |
ctaatccatcagtttgaggagattgagtttcatgtcttctcccaactataaagaaatcatgttcgttcacaatctcacgtagaaaagatgc |
38398529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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