View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11240_low_6 (Length: 586)
Name: NF11240_low_6
Description: NF11240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11240_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 12 - 451
Target Start/End: Complemental strand, 41988158 - 41987723
Alignment:
| Q |
12 |
gagaagaaactagaattttgacgatggttcacaagaaagaaagaagggaagagagactagtatggtttatcattatgtgaacttcatttatgatttattt |
111 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41988158 |
gagaagaaactagagttttggcgatggttcacaagaaagaa----gggaagagagactagtatggtttatcattaggtgaacttcatttatgatttattt |
41988063 |
T |
|
| Q |
112 |
ttgctttcattacctgtttggtgggatccattccacatgattttttcctcataagagagtggtgaaagaaaaaatgttgttgctaacttttctgttcttt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41988062 |
ttgctttcattacctgtttggtgggatccattccacatgattttttcctcataagagagtggtgaaagaaaaaatgttgttgctaacttttctgttcttt |
41987963 |
T |
|
| Q |
212 |
gatttttcgtacgtgttgtactttgtagcttttcttgccacgaatggctaaagcttgtactattcaataagataggaatatgaattatgggtcaacaata |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41987962 |
gatttttcgtacgtgttgtactttgtagcttttcttgccacgaatggctaaagcttgtactattcaataagataggaatatgaattatgggtcaacaata |
41987863 |
T |
|
| Q |
312 |
aggggttggtggcacctgttaaaaatgatactcatcaaaagaccaacttgaaaatctttgatttcgttgacactgacccaagcaaatgcaattaatatta |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41987862 |
gggggttggtggcacctgttaaaaatgatactcatcaaaggaccaacttgaaaatctttgatttcgttgacactgacccaagcaaatgcaattagtatta |
41987763 |
T |
|
| Q |
412 |
tgactattacaaacagatttggccatcacaaataaaagtg |
451 |
Q |
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| T |
41987762 |
cgactattacaaacagatttggccctcacaaataaaagtg |
41987723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 462 - 571
Target Start/End: Complemental strand, 41987679 - 41987574
Alignment:
| Q |
462 |
aaaatttgtcacttatatcgtgaagcaaatacttgtgttcatgcttaatttagctaatagggaatgtgattctcataatgtttgtgcagtttatgatgat |
561 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41987679 |
aaaatttgtcacttatatcgtgaagcaaatacttatgttcatgctt----tagctaatagggaatgtgattctcataatgtttgtgcagtttatgatgat |
41987584 |
T |
|
| Q |
562 |
acatgtttgt |
571 |
Q |
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|||||||||| |
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| T |
41987583 |
acatgtttgt |
41987574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 12 - 451
Target Start/End: Original strand, 1220355 - 1220790
Alignment:
| Q |
12 |
gagaagaaactagaattttgacgatggttcacaagaaagaaagaagggaagagagactagtatggtttatcattatgtgaacttcatttatgatttattt |
111 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1220355 |
gagaagaaattagagttttgacgatggttcacaaga----aagaagggaagagagactagtatggtttatcattcgatgaacttcatttatgatttattt |
1220450 |
T |
|
| Q |
112 |
ttgctttcattacctgtttggtgggatccattccacatgattttttcctcataagagagtggtgaaagaaaaaatgttgttgctaacttttctgttcttt |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1220451 |
ttgctttcattacctgtttggtgggatccattccacatgattttttcctcataagagagtggtgaaagaaaaaatgttgttgctaacttttctgttcttt |
1220550 |
T |
|
| Q |
212 |
gatttttcgtacgtgttgtactttgtagcttttcttgccacgaatggctaaagcttgtactattcaataagataggaatatgaattatgggtcaacaata |
311 |
Q |
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|||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1220551 |
gatttttcatatgtgttgtactttgtagctattcttgccacgaatggctaaagcttgtactattcaataagataggaatatgaattatgggtcaacaata |
1220650 |
T |
|
| Q |
312 |
aggggttggtggcacctgttaaaaatgatactcatcaaaagaccaacttgaaaatctttgatttcgttgacactgacccaagcaaatgcaattaatatta |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1220651 |
aggggttggtggcacctgttaaaaatgatactcatcaaaggaccaacttgaaaatctttgatttcgttgacactgacccaagcaaatgcaattagtatta |
1220750 |
T |
|
| Q |
412 |
tgactattacaaacagatttggccatcacaaataaaagtg |
451 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||| |
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| T |
1220751 |
cgactattacaaacaaatttggccatcacaaataaaagtg |
1220790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 462 - 571
Target Start/End: Original strand, 1220834 - 1220939
Alignment:
| Q |
462 |
aaaatttgtcacttatatcgtgaagcaaatacttgtgttcatgcttaatttagctaatagggaatgtgattctcataatgtttgtgcagtttatgatgat |
561 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1220834 |
aaaatttgtcacttatatggtgaagcaaatacttgtgttcatgctt----tagctaatagggaatgtgattctcataatgtttgtgcagtttatgatgat |
1220929 |
T |
|
| Q |
562 |
acatgtttgt |
571 |
Q |
| |
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|||||||||| |
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|
| T |
1220930 |
acatgtttgt |
1220939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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