View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11240_low_7 (Length: 496)

Name: NF11240_low_7
Description: NF11240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11240_low_7
NF11240_low_7
[»] chr1 (6 HSPs)
chr1 (263-488)||(47523874-47524099)
chr1 (40-125)||(47523651-47523736)
chr1 (264-422)||(50204709-50204866)
chr1 (264-421)||(18990085-18990242)
chr1 (266-420)||(33966838-33966994)
chr1 (308-398)||(43866439-43866530)
[»] chr4 (10 HSPs)
chr4 (266-421)||(49577306-49577461)
chr4 (263-421)||(4289823-4289981)
chr4 (263-421)||(39598853-39599011)
chr4 (263-420)||(2588236-2588393)
chr4 (263-421)||(16497454-16497612)
chr4 (263-420)||(5650486-5650643)
chr4 (264-421)||(55911341-55911499)
chr4 (267-354)||(52249337-52249424)
chr4 (263-352)||(16497714-16497803)
chr4 (338-421)||(11157107-11157190)
[»] chr8 (11 HSPs)
chr8 (263-421)||(29168252-29168409)
chr8 (263-421)||(3376074-3376230)
chr8 (263-420)||(1548344-1548501)
chr8 (263-421)||(23033582-23033740)
chr8 (263-421)||(34784243-34784401)
chr8 (263-421)||(3117910-3118068)
chr8 (267-421)||(20900977-20901132)
chr8 (264-361)||(1469106-1469204)
chr8 (361-421)||(3277750-3277810)
chr8 (307-421)||(36881747-36881861)
chr8 (86-118)||(29168558-29168590)
[»] chr2 (15 HSPs)
chr2 (263-421)||(36536126-36536284)
chr2 (263-421)||(44673368-44673526)
chr2 (267-426)||(25438500-25438659)
chr2 (263-421)||(37154590-37154741)
chr2 (277-414)||(41714894-41715031)
chr2 (264-422)||(42975600-42975758)
chr2 (338-421)||(33391759-33391842)
chr2 (366-420)||(26377615-26377669)
chr2 (264-376)||(40712572-40712681)
chr2 (306-361)||(26377567-26377625)
chr2 (314-421)||(950490-950597)
chr2 (338-421)||(21005775-21005858)
chr2 (338-421)||(39573913-39573996)
chr2 (338-421)||(6537162-6537245)
chr2 (86-118)||(26377360-26377392)
[»] chr5 (8 HSPs)
chr5 (263-421)||(7992132-7992290)
chr5 (298-420)||(28276946-28277068)
chr5 (264-396)||(41106730-41106862)
chr5 (267-410)||(10916858-10917001)
chr5 (263-380)||(5240648-5240765)
chr5 (267-421)||(41377584-41377729)
chr5 (266-340)||(43280947-43281021)
chr5 (338-421)||(28828226-28828309)
[»] chr3 (7 HSPs)
chr3 (264-421)||(7227282-7227437)
chr3 (263-421)||(9454823-9454981)
chr3 (263-420)||(32130363-32130520)
chr3 (263-421)||(53208430-53208588)
chr3 (278-426)||(7323058-7323206)
chr3 (264-421)||(50064072-50064229)
chr3 (86-122)||(9454650-9454686)
[»] chr7 (9 HSPs)
chr7 (263-421)||(12858970-12859128)
chr7 (267-421)||(32775375-32775529)
chr7 (267-421)||(19886776-19886930)
chr7 (263-421)||(36167473-36167631)
chr7 (301-421)||(46082204-46082329)
chr7 (263-420)||(5465442-5465591)
chr7 (264-421)||(19780832-19780993)
chr7 (362-421)||(11599455-11599514)
chr7 (264-338)||(46082338-46082412)
[»] chr6 (6 HSPs)
chr6 (263-421)||(13425443-13425601)
chr6 (267-412)||(18133656-18133801)
chr6 (277-412)||(23889796-23889931)
chr6 (264-421)||(25100780-25100938)
chr6 (303-396)||(6539314-6539407)
chr6 (338-421)||(10875612-10875695)
[»] scaffold0325 (1 HSPs)
scaffold0325 (264-421)||(8547-8705)
[»] scaffold0302 (1 HSPs)
scaffold0302 (267-421)||(17295-17449)
[»] scaffold0768 (1 HSPs)
scaffold0768 (264-369)||(4392-4495)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 263 - 488
Target Start/End: Original strand, 47523874 - 47524099
Alignment:
Q  263 atgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttg 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47523874 atgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttg 47523973  T
Q  363 tgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacattcgtgaagatggttatacattctgacattggattcaacttca 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47523974 tgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacattcgtgaagatggttatacattctgacattggattcaacttca 47524073  T
Q  463 gtagtaagtgctattattgcctctgt 488  Q
    |||||||||||||||||| |||||||    
T  47524074 gtagtaagtgctattatttcctctgt 47524099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 47523651 - 47523736
Alignment:
Q  40 cagttctgttggttttagtgtcggatggtgaagaatgtagccaatcacgtgccacggcacctcgaccgtgcttcgactttactatg 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  47523651 cagttctgttggttttagtgtcggatggtgaagaatgtagccaatcacgtgccacagcacctcgactgtgcttcgactttactatg 47523736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 264 - 422
Target Start/End: Original strand, 50204709 - 50204866
Alignment:
Q  264 tgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgt 363  Q
    ||||||||||||||||||| | |||||||||| | | | |||| |||||||||||||||||||||| |||| |||||||||| |||||||||  |||  |    
T  50204709 tgcttggttcctctgtttttcctctattttctctgttt-tttcactcaactctatcaacaacctactgatcttacttacgaagcgtgttacgaccctcat 50204807  T
Q  364 gtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacattc 422  Q
    ||||||  ||||||||| ||| ||||||||||| ||  | ||||| |||||||||||||    
T  50204808 gtttacaatctttcaccagcctaccgatcctacttaaaaactcgaacctgactacattc 50204866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 264 - 421
Target Start/End: Complemental strand, 18990242 - 18990085
Alignment:
Q  264 tgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgt 363  Q
    |||||||||| | |||||| | |||||||| | |   ||||||||||||||||||||||||||||||||||| || ||| |||| ||||| |||||| ||    
T  18990242 tgcttggttcttgtgtttttcctctattttatcttattatttctctcaactctatcaacaacctaccgatccaacatacaaaccatgttatgttcctcgt 18990143  T
Q  364 gtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
     ||||||||| ||||||||||| || | ||||| | ||||||| ||||| ||||||||    
T  18990142 atttacgttccttcaccggccgtcctaccctacgtgggatctcaatcctaactacatt 18990085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 266 - 420
Target Start/End: Original strand, 33966838 - 33966994
Alignment:
Q  266 cttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgtgt 365  Q
    |||| |||||||||| | | ||||| | |||| | ||| ||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||| |  |    
T  33966838 cttgattcctctgttattcctctatatgctatgtttatatctctcaactctatcaataacctaccgatcctacttacgaactgtgttacattcctcgctt 33966937  T
Q  366 ttacgttctttcaccggccgaccgatcctacatag--gatctcgatcctgactacat 420  Q
    |||||||| |||||||||| || |||||||| |||  ||||||  ||||||||||||    
T  33966938 ttacgttccttcaccggcctactgatcctacgtaggagatctcagtcctgactacat 33966994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 308 - 398
Target Start/End: Original strand, 43866439 - 43866530
Alignment:
Q  308 ctcaactctatcaacaac-ctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacat 398  Q
    |||||||||||||| ||  |||| |||||||||||||||||||||||||||||| ||||||||||||||| |  |||||||| |||||||||    
T  43866439 ctcaactctatcaaaaaagctactgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttaattggccgaccaatcctacat 43866530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 266 - 421
Target Start/End: Complemental strand, 49577461 - 49577306
Alignment:
Q  266 cttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgtgt 365  Q
    ||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||    
T  49577461 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaactgtgttacgttcctcgtgt 49577362  T
Q  366 ttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    |||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  49577361 ttacattctttcaccggccgaccgatcctacgtaggatctcgatcatgactacatt 49577306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 263 - 421
Target Start/End: Complemental strand, 4289981 - 4289823
Alignment:
Q  263 atgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttg 362  Q
    |||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  4289981 atgcttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgggttacgttcctcg 4289882  T
Q  363 tgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    |||||| ||||||||| ||||| ||||||||||| |||||||||||| |||||||||||    
T  4289881 tgtttaagttctttcaacggccaaccgatcctacgtaggatctcgatactgactacatt 4289823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 263 - 421
Target Start/End: Complemental strand, 39599011 - 39598853
Alignment:
Q  263 atgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttg 362  Q
    |||||||||||||||||||||| |||||||||| | |||||||| ||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| |    
T  39599011 atgcttggttcctctgttttccctctattttctctatctatttcgctcaactctgtcaacaacctaccgatcctacttacgaacagtgctacgttcctcg 39598912  T
Q  363 tgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  39598911 tgtttacgttctttcactgcccgaccgatcctacataggatctcgatcctgactacatt 39598853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 263 - 420
Target Start/End: Complemental strand, 2588393 - 2588236
Alignment:
Q  263 atgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttg 362  Q
    |||||||||||| ||||||||| |||||||||  | | |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  2588393 atgcttggttcccctgttttccctctattttccctatatatttctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcctcg 2588294  T
Q  363 tgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacat 420  Q
    |||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||    
T  2588293 tgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 2588236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 263 - 421
Target Start/End: Complemental strand, 16497612 - 16497454
Alignment:
Q  263 atgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttg 362  Q
    |||||||| ||| ||||||||| |||||||||  | | |||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||| |    
T  16497612 atgcttggctcccctgttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttacgaaccgtgttacgttcctcg 16497513  T
Q  363 tgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    |||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||    
T  16497512 tgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacatt 16497454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 263 - 420
Target Start/End: Complemental strand, 5650643 - 5650486
Alignment:
Q  263 atgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttg 362  Q
    ||||||||||||| |||||||| |||||||||  | | |||||||||||| |||||| ||| |||| ||||||||||||||||||||||||||||||| |    
T  5650643 atgcttggttcctttgttttccctctattttccctatatatttctctcaattctatcgacagcctatcgatcctacttacgaaccgtgttacgttcctcg 5650544  T
Q  363 tgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacat 420  Q
    |||||||||||||||||||||||||||||||||  ||||| |||| ||||||||||||    
T  5650543 tgtttacgttctttcaccggccgaccgatcctatgtaggaactcgttcctgactacat 5650486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 264 - 421
Target Start/End: Original strand, 55911341 - 55911499
Alignment:
Q  264 tgcttggttcctctgttttccgtctattttctatc--tctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttcctt 361  Q
    ||||||||||||||||||||| |||||||||| |   | ||||| |||||||||||||||||||||||||||||||||||  || |||||||||  ||      
T  55911341 tgcttggttcctctgttttccctctattttctctggttttattt-tctcaactctatcaacaacctaccgatcctacttataaatcgtgttacgacccac 55911439  T
Q  362 gtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
     |||||| | | ||||||| ||| ||| ||||||| ||| | ||||| ||||||||||||    
T  55911440 atgtttatgatatttcaccagcctaccaatcctacttagaaactcgaacctgactacatt 55911499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 267 - 354
Target Start/End: Complemental strand, 52249424 - 52249337
Alignment:
Q  267 ttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttac 354  Q
    |||||||||||||||||| |||||||||  | | |||||||||||| |||||| |||||||| |||||||||| ||||||||||||||    
T  52249424 ttggttcctctgttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctactgacgaaccgtgttac 52249337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 263 - 352
Target Start/End: Complemental strand, 16497803 - 16497714
Alignment:
Q  263 atgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgtt 352  Q
    |||||||| ||| ||||||||| |||||||||  | | |||||||||||| |||||| |||||||| |||||||||||||||||||||||    
T  16497803 atgcttggctcccctgttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttacgaaccgtgtt 16497714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 421
Target Start/End: Original strand, 11157107 - 11157190
Alignment:
Q  338 cttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    |||| |||||||||||||||||  |  ||||||| | |||||||||||| ||| ||||| ||| | |||| |||||||||||||    
T  11157107 cttatgaaccgtgttacgttccccgactttacgtcccttcaccggccgatcgaacctacgtagaaactcgttcctgactacatt 11157190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 8e-56; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 263 - 421
Target Start/End: Complemental strand, 29168409 - 29168252
Alignment:
Q  263 atgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttg 362  Q
    ||||||||||||||||||| ||  ||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  29168409 atgcttggttcctctgtttcccc-ctattttctctatctatctctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttcctca 29168311  T
Q  363 tgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    |||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||    
T  29168310 tgtttacgttctttcaccggccgaccgatcctatgtaggatctctatcctgactacatt 29168252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 263 - 421
Target Start/End: Complemental strand, 3376230 - 3376074
Alignment:
Q  263 atgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttg 362  Q
    |||||||||||||||||||| | |||||| |||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  3376230 atgcttggttcctctgtttttcctctattctctatct--atttatctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttcctcg 3376133  T
Q  363 tgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    |||||||||||||||| |||| |||||| ||||| |||||||| |||||||||||||||    
T  3376132 tgtttacgttctttcatcggcggaccgaacctacgtaggatcttgatcctgactacatt 3376074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 263 - 420
Target Start/End: Original strand, 1548344 - 1548501
Alignment:
Q  263 atgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttg 362  Q
    |||||||||||| ||||||||| |||||||||  | |  ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  1548344 atgcttggttcccctgttttccctctattttccctatacatttctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcctcg 1548443  T
Q  363 tgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacat 420  Q
    |||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||    
T  1548444 tgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 1548501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 263 - 421
Target Start/End: Original strand, 23033582 - 23033740
Alignment:
Q  263 atgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttg 362  Q
    |||||||||||| ||||||||| |||||||||  | | |||||||||||| |||||  |||||||| ||||||||||||||||||||||||||||||| |    
T  23033582 atgcttggttcccctgttttccctctattttccctatatatttctctcaattctattgacaacctatcgatcctacttacgaaccgtgttacgttcctcg 23033681  T
Q  363 tgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    |||||||||||||||||||||||||||| ||||| ||||| |||| |||||||||||||    
T  23033682 tgtttacgttctttcaccggccgaccgaacctacgtaggaactcgttcctgactacatt 23033740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 263 - 421
Target Start/End: Complemental strand, 34784401 - 34784243
Alignment:
Q  263 atgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttg 362  Q
    |||||||||||| ||||||||| | |||||||  | | |||||||||||| |||||| |||||||| ||||||||||||| ||||||||||||||||| |    
T  34784401 atgcttggttcccctgttttccctatattttccctatatatttctctcaattctatcgacaacctaacgatcctacttacaaaccgtgttacgttcctcg 34784302  T
Q  363 tgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    |||||| ||||||||||||||||||||||||||| ||||| |||| |||||||||||||    
T  34784301 tgtttatgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacatt 34784243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 263 - 421
Target Start/End: Original strand, 3117910 - 3118068
Alignment:
Q  263 atgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttg 362  Q
    |||||||||||| ||| ||||| |||||||||  | | |||||||||||| |||||| |||||||| |||||||||||||||||| |||||||||||| |    
T  3117910 atgcttggttcccctgctttccctctattttccctatatatttctctcaattctatctacaacctatcgatcctacttacgaaccatgttacgttcctcg 3118009  T
Q  363 tgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    |||||||||||||||||||||||||| ||||||  ||||| |||| |||||||||||||    
T  3118010 tgtttacgttctttcaccggccgaccaatcctatgtaggaactcgttcctgactacatt 3118068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 267 - 421
Target Start/End: Original strand, 20900977 - 20901132
Alignment:
Q  267 ttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtt 366  Q
    |||||||| ||||||||| |||||||||  | | |||||||||||| |||||| ||||||||  ||||| |||||||||||||||||||||||| |||||    
T  20900977 ttggttcccctgttttccctctattttccctgtatatttctctcaattctatcgacaacctattgatcccacttacgaaccgtgttacgttcctcgtgtt 20901076  T
Q  367 tacgttctttcaccggccgaccgatcctacataggatctcg-atcctgactacatt 421  Q
    |||||||||||||||||||||||||||||| ||||| ||||  |||||||||||||    
T  20901077 tacgttctttcaccggccgaccgatcctacgtaggaactcgtttcctgactacatt 20901132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 361
Target Start/End: Original strand, 1469106 - 1469204
Alignment:
Q  264 tgcttggttcctctgttttccgtctattttctatctctatt-tctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttcctt 361  Q
    |||||||||||||| |||||| ||||| || | | | | || |||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||    
T  1469106 tgcttggttcctctcttttccctctatattttctgttttttctctctcaactctatgaacaacctaccgatcctacttacggaccgtgtttcgttcctt 1469204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 361 - 421
Target Start/End: Original strand, 3277750 - 3277810
Alignment:
Q  361 tgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    |||||||||||||||||||||||||||||||||||  ||||| |||| |||||||||||||    
T  3277750 tgtgtttacgttctttcaccggccgaccgatcctaagtaggaactcgttcctgactacatt 3277810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 421
Target Start/End: Original strand, 36881747 - 36881861
Alignment:
Q  307 tctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctc 406  Q
    |||||| ||||||||||||| |||| ||||||||||||| ||||||||   | | | ||||||| ||||||||| |||  |||||||||| ||  | ||     
T  36881747 tctcaaatctatcaacaaccaaccggtcctacttacgaatcgtgttacaaccttcgcgtttacgatctttcaccagcctgccgatcctacttaaaaactt 36881846  T
Q  407 gatcctgactacatt 421  Q
    || ||||||||||||    
T  36881847 gaacctgactacatt 36881861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 29168590 - 29168558
Alignment:
Q  86 acgtgccacggcacctcgaccgtgcttcgactt 118  Q
    ||||||||| |||||||||||||||||||||||    
T  29168590 acgtgccacagcacctcgaccgtgcttcgactt 29168558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 8e-56; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 263 - 421
Target Start/End: Complemental strand, 36536284 - 36536126
Alignment:
Q  263 atgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttg 362  Q
    |||||||||||||||||||| | |||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  36536284 atgcttggttcctctgtttttcctctattttctctatctattcctctcaactctatcaacaacctaccgatcctacttacaaaccgtgttacgtgccttg 36536185  T
Q  363 tgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    ||||||| ||||||||| |||||||| ||||||| |||||||||||| |||||||||||    
T  36536184 tgtttactttctttcactggccgaccaatcctacgtaggatctcgattctgactacatt 36536126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 263 - 421
Target Start/End: Original strand, 44673368 - 44673526
Alignment:
Q  263 atgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttg 362  Q
    ||||||||||||  |||||||| |||||||||  | | |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  44673368 atgcttggttcccttgttttccctctattttccctatatatttctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcctcg 44673467  T
Q  363 tgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    |||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||    
T  44673468 tgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacatt 44673526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 267 - 426
Target Start/End: Original strand, 25438500 - 25438659
Alignment:
Q  267 ttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtt 366  Q
    |||| ||| ||||||||| |||||||||  | | |||||||||||  | |||| |||||||| ||||||||||||||||||||||||||||||| |||||    
T  25438500 ttggctcccctgttttccctctattttccctatatatttctctcacttatatcgacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtt 25438599  T
Q  367 tacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacattcgtga 426  Q
    |||||||||||||||||||||||||||||| ||||| |||| ||||||||||||| ||||    
T  25438600 tacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattggtga 25438659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 263 - 421
Target Start/End: Complemental strand, 37154741 - 37154590
Alignment:
Q  263 atgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttg 362  Q
    |||| |||||||| ||||| || |||||||||| | |  ||||||||||| ||||||       ||| |||||||||||||||||||||||||||||| |    
T  37154741 atgcatggttcctttgtttaccctctattttctctatacatttctctcaattctatc-------tactgatcctacttacgaaccgtgttacgttcctcg 37154649  T
Q  363 tgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    ||||||||||||||||||  || |||||| |||| ||||||||||||| ||||||||||    
T  37154648 tgtttacgttctttcaccaaccaaccgattctacgtaggatctcgatcttgactacatt 37154590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 277 - 414
Target Start/End: Complemental strand, 41715031 - 41714894
Alignment:
Q  277 tgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttcttt 376  Q
    ||||||||  ||||||||| | |||||| || ||||| |||| ||||||||||| ||||||||||| || ||||||| ||||||||||||||||||||||    
T  41715031 tgttttcccactattttctctatctattactttcaacactattaacaacctaccaatcctacttacaaatcgtgttatgttccttgtgtttacgttcttt 41714932  T
Q  377 caccggccgaccgatcctacataggatctcgatcctga 414  Q
    | |||  | ||| ||| ||| |||||||||||||||||    
T  41714931 cgccgaacaaccaatcatacgtaggatctcgatcctga 41714894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 264 - 422
Target Start/End: Complemental strand, 42975758 - 42975600
Alignment:
Q  264 tgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgt 363  Q
    ||||||||||||| ||||| | |||||||||| | | | |||||||||||||||||||||||||||||||||||||||  || |||||||||  ||| ||    
T  42975758 tgcttggttcctccgtttttcctctattttctctgtttttttctctcaactctatcaacaacctaccgatcctacttataaatcgtgttacgaccctcgt 42975659  T
Q  364 gtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacattc 422  Q
    ||||||  ||||| ||| ||| ||| ||||||| ||  | ||| | |||||||||||||    
T  42975658 gtttacaatcttttaccagcctaccaatcctacttaaaaactctaacctgactacattc 42975600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 338 - 421
Target Start/End: Complemental strand, 33391842 - 33391759
Alignment:
Q  338 cttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    ||||| ||||||||||||||||| ||||||||||||  ||||||||||||| ||||||  |||||||| |||||||||||||||    
T  33391842 cttacaaaccgtgttacgttcctcgtgtttacgttccatcaccggccgaccaatcctatgtaggatcttgatcctgactacatt 33391759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 366 - 420
Target Start/End: Original strand, 26377615 - 26377669
Alignment:
Q  366 ttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacat 420  Q
    |||||||| |||||||||||||||||||||  || ||||||||||||||||||||    
T  26377615 ttacgttccttcaccggccgaccgatcctatgtacgatctcgatcctgactacat 26377669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 264 - 376
Target Start/End: Complemental strand, 40712681 - 40712572
Alignment:
Q  264 tgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgt 363  Q
    |||||| |||||||||||| | |||||||||  | |   ||||||||||||||||||| |||||||| |||||||||||| |||||| || |  ||| ||    
T  40712681 tgcttgtttcctctgtttttcctctattttccgttt---tttctctcaactctatcaaaaacctaccaatcctacttacggaccgtgctatgaccctcgt 40712585  T
Q  364 gtttacgttcttt 376  Q
    ||||||| |||||    
T  40712584 gtttacgatcttt 40712572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 361
Target Start/End: Original strand, 26377567 - 26377625
Alignment:
Q  306 ctctcaactctatcaacaa---cctaccgatcctacttacgaaccgtgttacgttcctt 361  Q
    |||||||||||||||| ||   |||||| ||||||||||||||||||||||||||||||    
T  26377567 ctctcaactctatcaataataacctacctatcctacttacgaaccgtgttacgttcctt 26377625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 421
Target Start/End: Complemental strand, 950597 - 950490
Alignment:
Q  314 tctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctg 413  Q
    ||||||||||||||||| ||||||||||||||  ||||||||  ||| |||||| || || || ||| ||| ||||||||||| ||  | || || ||||    
T  950597 tctatcaacaacctaccaatcctacttacgaattgtgttacgaccctcgtgtttgcgatcatttaccagcctaccgatcctacttaaaaacttgaacctg 950498  T
Q  414 actacatt 421  Q
    ||||||||    
T  950497 actacatt 950490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 338 - 421
Target Start/End: Complemental strand, 21005858 - 21005775
Alignment:
Q  338 cttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    ||||||||||||||||||||||  |  ||||||| | |||||||||||| ||| ||||| ||| | |||| |||||||||||||    
T  21005858 cttacgaaccgtgttacgttccccgactttacgtcccttcaccggccgatcgaacctacgtagaaactcgttcctgactacatt 21005775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 338 - 421
Target Start/End: Complemental strand, 39573996 - 39573913
Alignment:
Q  338 cttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    ||||||||||||||||||||||  |  ||||||| | |||||||||||| ||| ||||| ||| | |||| |||||||||||||    
T  39573996 cttacgaaccgtgttacgttccccgactttacgtcccttcaccggccgatcgaacctacgtagaaactcgttcctgactacatt 39573913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 421
Target Start/End: Original strand, 6537162 - 6537245
Alignment:
Q  338 cttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    ||||||||||||||||||||||  |  ||||||| | |||||| ||||| ||| ||||| || || |||| |||||||||||||    
T  6537162 cttacgaaccgtgttacgttccccgactttacgtcccttcaccagccgatcgaacctacgtaagaactcgttcctgactacatt 6537245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 26377360 - 26377392
Alignment:
Q  86 acgtgccacggcacctcgaccgtgcttcgactt 118  Q
    ||||||||||||||||| |||||||||||||||    
T  26377360 acgtgccacggcacctccaccgtgcttcgactt 26377392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 263 - 421
Target Start/End: Complemental strand, 7992290 - 7992132
Alignment:
Q  263 atgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttg 362  Q
    |||||||||||| ||||||||| |||||||||  | | |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  7992290 atgcttggttcccctgttttccctctattttccctatatatttctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcctcg 7992191  T
Q  363 tgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    |||||||||||||||||||||||||||||||||| ||||| |||| || ||||||||||    
T  7992190 tgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcatgactacatt 7992132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 298 - 420
Target Start/End: Original strand, 28276946 - 28277068
Alignment:
Q  298 ctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctaca 397  Q
    ||||||||||||| | |||||||||||||||  |||||||||||||||| ||||||||||||| || |||||||||||||||||||| | |||||||||     
T  28276946 ctctatttctctctattctatcaacaacctattgatcctacttacgaactgtgttacgttcctcgtatttacgttctttcaccggccaatcgatcctacg 28277045  T
Q  398 taggatctcgatcctgactacat 420  Q
    ||||||||| |||||||||||||    
T  28277046 taggatctcaatcctgactacat 28277068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 264 - 396
Target Start/End: Original strand, 41106730 - 41106862
Alignment:
Q  264 tgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgt 363  Q
    |||| |||||||||||||||| ||||||||||   | | ||| ||||||||||||||||||||||| ||||||||||||||| ||||||| |  ||||||    
T  41106730 tgctcggttcctctgttttccctctattttctcagtttttttttctcaactctatcaacaacctacggatcctacttacgaatcgtgttatggcccttgt 41106829  T
Q  364 gtttacgttctttcaccggccgaccgatcctac 396  Q
    ||||||  ||||||||| ||| || ||||||||    
T  41106830 gtttacaatctttcaccagcctactgatcctac 41106862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 267 - 410
Target Start/End: Complemental strand, 10917001 - 10916858
Alignment:
Q  267 ttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtt 366  Q
    ||||||||| |||||| | |||||||||| | | ||||||||||||||||||||| || ||| |||  |||||||  || |||||||||||||| |||||    
T  10917001 ttggttcctatgtttttcctctattttctctatatatttctctcaactctatcaataatctatcgactctacttataaaacgtgttacgttcctcgtgtt 10916902  T
Q  367 tacgttctttcaccggccgaccgatcctacataggatctcgatc 410  Q
    || |||||||||||||||||   || |||| |||||||||||||    
T  10916901 tatgttctttcaccggccgattaattctacgtaggatctcgatc 10916858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 263 - 380
Target Start/End: Original strand, 5240648 - 5240765
Alignment:
Q  263 atgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttg 362  Q
    ||||||||||||| |||||| | ||||||||   | ||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| | ||| |    
T  5240648 atgcttggttcctatgtttttcctctatttttactatctatttctctcaactctatcaacaacctactgatcctacttatgaaccatgttacatccctcg 5240747  T
Q  363 tgtttacgttctttcacc 380  Q
    ||||||  ||||||||||    
T  5240748 tgtttaaattctttcacc 5240765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 267 - 421
Target Start/End: Complemental strand, 41377729 - 41377584
Alignment:
Q  267 ttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtt 366  Q
    |||||||||||||| | | |||||||||| | | | |||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||     
T  41377729 ttggttcctctgttattcctctattttctctgttt-tttctctcaactctatcaacaacctaccaatcctacttacaaatcgtgttacgttcctcgtgt- 41377632  T
Q  367 tacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
           ||||||| || ||||| |||||| |||||| |||||||||||||||||    
T  41377631 -------tttcaccagctgaccggtcctacttaggatatcgatcctgactacatt 41377584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 266 - 340
Target Start/End: Complemental strand, 43281021 - 43280947
Alignment:
Q  266 cttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctactt 340  Q
    ||||||||||||||||| | || ||||||| | | | ||||| |||||||||||||||||||||||||| |||||    
T  43281021 cttggttcctctgtttttcctcaattttctctgtttttttctttcaactctatcaacaacctaccgatcatactt 43280947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 338 - 421
Target Start/End: Original strand, 28828226 - 28828309
Alignment:
Q  338 cttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    ||||||||||||||||||||||  |  ||||||| | |||||||||||| ||| ||||| ||| | |||| |||||||||||||    
T  28828226 cttacgaaccgtgttacgttccccgactttacgtcccttcaccggccgatcgaacctacgtagaaactcgttcctgactacatt 28828309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 264 - 421
Target Start/End: Original strand, 7227282 - 7227437
Alignment:
Q  264 tgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgt 363  Q
    ||||||||||||  ||||| | |||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||| ||    
T  7227282 tgcttggttcct--gtttttcctctattttctctatctatttctctcaactctatcaacaacctaccgatcctaattacgaaccgtggtacattcctcgt 7227379  T
Q  364 gtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  7227380 gtttacgttctttcaccggacgactgatcctacataggatctcgatcctgactacatt 7227437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 263 - 421
Target Start/End: Original strand, 9454823 - 9454981
Alignment:
Q  263 atgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttg 362  Q
    |||||||||||||||||||||| || ||||||  | | |||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||| |    
T  9454823 atgcttggttcctctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcg 9454922  T
Q  363 tgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    || ||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  9454923 tggttacgttttttcaccggccgaccgatcctacgtaggatcacgatcctgactacatt 9454981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 263 - 420
Target Start/End: Original strand, 32130363 - 32130520
Alignment:
Q  263 atgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttg 362  Q
    ||||||||||||| |||||||| |||||||||  | | |||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||| |    
T  32130363 atgcttggttcctttgttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttacgaaccgtgttacgttcctcg 32130462  T
Q  363 tgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacat 420  Q
    |||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||||||    
T  32130463 tgtttacgttctttcatcggccgaccgatcctacgtaggaactcgttcctgactacat 32130520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 263 - 421
Target Start/End: Complemental strand, 53208588 - 53208430
Alignment:
Q  263 atgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttg 362  Q
    |||||||| ||| ||||||||| |||||||||  | | |||||||||||| |||||| |||||||| |||||||||||| |||||||||||||||||| |    
T  53208588 atgcttggctcccctgttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttatgaaccgtgttacgttcctcg 53208489  T
Q  363 tgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    |||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||    
T  53208488 tgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacatt 53208430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 278 - 426
Target Start/End: Original strand, 7323058 - 7323206
Alignment:
Q  278 gttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttc 377  Q
    ||||||| |||||||||  | | |||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7323058 gttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttc 7323157  T
Q  378 accggccgaccgatcctacataggatctcgatcctgactacattcgtga 426  Q
    ||||||||||||||||||| ||||| || | ||||||||||||| ||||    
T  7323158 accggccgaccgatcctacgtaggaacttgttcctgactacattggtga 7323206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 264 - 421
Target Start/End: Original strand, 50064072 - 50064229
Alignment:
Q  264 tgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgt 363  Q
    ||||||||||||||||||| | ||||| |||| | | ||| ||||||||||||||||| |||||||||||||||||||||||||| ||  ||||||| ||    
T  50064072 tgcttggttcctctgtttttcctctatattctctgtttatatctctcaactctatcaataacctaccgatcctacttacgaaccgcgtctcgttcctcgt 50064171  T
Q  364 gtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
     ||||| ||| |||| |||||||| |||||||| ||||||||||||||||||||||||    
T  50064172 ttttacattccttcagcggccgactgatcctacgtaggatctcgatcctgactacatt 50064229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 9454650 - 9454686
Alignment:
Q  86 acgtgccacggcacctcgaccgtgcttcgactttact 122  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  9454650 acgtgccacagcacctcgaccgtgctttgactttact 9454686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 5e-51; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 263 - 421
Target Start/End: Complemental strand, 12859128 - 12858970
Alignment:
Q  263 atgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttg 362  Q
    |||||||||||| ||||||||| |||||||||  | | |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||      
T  12859128 atgcttggttcccctgttttccctctattttccctatatatttctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcctca 12859029  T
Q  363 tgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    ||||||||||||||||||||||||||||| |||| ||||| |||| |||||||||||||    
T  12859028 tgtttacgttctttcaccggccgaccgatgctacgtaggaactcgttcctgactacatt 12858970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 267 - 421
Target Start/End: Original strand, 32775375 - 32775529
Alignment:
Q  267 ttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtt 366  Q
    |||| ||| ||||||||| |||||||||  | | |||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||| |||||    
T  32775375 ttggctcccctgttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtt 32775474  T
Q  367 tacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    ||||||||||||||||||||||||||||||  |||| |||| |||||||||||||    
T  32775475 tacgttctttcaccggccgaccgatcctacgcaggaactcgttcctgactacatt 32775529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 267 - 421
Target Start/End: Original strand, 19886776 - 19886930
Alignment:
Q  267 ttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtt 366  Q
    |||| ||| ||||||||| |||||||||  | | |||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||| |||||    
T  19886776 ttggctcccctgttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtt 19886875  T
Q  367 tacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    ||||||||||||||||||||||||||||||   ||| |||| |||||||||||||    
T  19886876 tacgttctttcaccggccgaccgatcctacgctggaactcgttcctgactacatt 19886930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 263 - 421
Target Start/End: Complemental strand, 36167631 - 36167473
Alignment:
Q  263 atgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttg 362  Q
    |||||||| ||| ||||||| | |||||||||  | | |||||||||||| |||||| |||||||| | ||||||||||||||||||||||||||||| |    
T  36167631 atgcttggctcccctgtttttcctctattttccctatatatttctctcaattctatcgacaacctatcaatcctacttacgaaccgtgttacgttcctcg 36167532  T
Q  363 tgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    ||||||| |||||||||||||| ||||||||||| ||||| |||| |||||||||||||    
T  36167531 tgtttacattctttcaccggccaaccgatcctacgtaggaactcgttcctgactacatt 36167473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 301 - 421
Target Start/End: Complemental strand, 46082329 - 46082204
Alignment:
Q  301 tatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccga-----ccgatccta 395  Q
    |||||||||||||||||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||| ||||||||| ||     |||||||||    
T  46082329 tatttctctcaactctatcaacaacctagcaatcctacatatgaaccgtgttacgttccttgtgtttacgttccttcaccggctgaccgatccgatccta 46082230  T
Q  396 cataggatctcgatcctgactacatt 421  Q
    | |||||||| |||||||||||||||    
T  46082229 cttaggatcttgatcctgactacatt 46082204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 263 - 420
Target Start/End: Complemental strand, 5465591 - 5465442
Alignment:
Q  263 atgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttg 362  Q
    |||||||| || | || ||||| |||||||||  | |||||||||||||||||||||||||||||||||||      |||||||| ||||||||||||||    
T  5465591 atgcttggctcttttgctttccctctattttcactatctatttctctcaactctatcaacaacctaccgata-----tacgaaccatgttacgttccttg 5465497  T
Q  363 tgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacat 420  Q
    |||||||||||||||||| | ||| |||||||   ||||||||||||||| |||||||    
T  5465496 tgtttacgttctttcaccagtcgaacgatcct---taggatctcgatcctaactacat 5465442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 264 - 421
Target Start/End: Complemental strand, 19780993 - 19780832
Alignment:
Q  264 tgcttggttcctctgttttccgtctattttctatctctatttc----tctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttcc 359  Q
    ||||||||||||||||||||| ||||||||||   | | ||||    |||||||||||||||||| ||||| |||||||||||||| ||||||| |  ||    
T  19780993 tgcttggttcctctgttttccctctattttctccttttttttccttctctcaactctatcaacaagctacctatcctacttacgaatcgtgttaagaccc 19780894  T
Q  360 ttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    | ||||||||| ||||||||| ||| || |||| ||| ||  | ||||| ||||||||||||    
T  19780893 tcgtgtttacgatctttcaccagcctactgatcatacttaaaaactcgaacctgactacatt 19780832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 362 - 421
Target Start/End: Complemental strand, 11599514 - 11599455
Alignment:
Q  362 gtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    |||||||||||| |||| ||||||||||| ||||| ||||||||||||||||||||||||    
T  11599514 gtgtttacgttccttcatcggccgaccgaacctacgtaggatctcgatcctgactacatt 11599455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 338
Target Start/End: Complemental strand, 46082412 - 46082338
Alignment:
Q  264 tgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctac 338  Q
    |||||| |||||||||||| | |||||||||| | | ||||| |||||||||||||||||| ||| | |||||||    
T  46082412 tgcttgtttcctctgtttttcctctattttctctgtttatttatctcaactctatcaacaaactagcaatcctac 46082338  T

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Target: chr6 (Bit Score: 103; Significance: 5e-51; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 263 - 421
Target Start/End: Complemental strand, 13425601 - 13425443
Alignment:
Q  263 atgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttg 362  Q
    ||||||| || | ||||||||| |||||||||  | | |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  13425601 atgcttgttttccctgttttccctctattttccctatatatttctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcctcg 13425502  T
Q  363 tgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    |||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||    
T  13425501 tgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacatt 13425443  T

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Target: chr6; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 267 - 412
Target Start/End: Complemental strand, 18133801 - 18133656
Alignment:
Q  267 ttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtt 366  Q
    |||||||||||||||| | |||||||||| | | ||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||    
T  18133801 ttggttcctctgtttttcctctattttctctatttatttctgtcaactctatcaaaaacctaccgatcctacttatgaaccgtgttacgttcctcgtgtt 18133702  T
Q  367 tacgttctttcaccggccgaccgatcctacataggatctcgatcct 412  Q
    | ||||| ||||||||||||||| |||| | ||||| |||||||||    
T  18133701 ttcgttcattcaccggccgaccggtcctccgtaggacctcgatcct 18133656  T

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Target: chr6; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 277 - 412
Target Start/End: Complemental strand, 23889931 - 23889796
Alignment:
Q  277 tgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttcttt 376  Q
    |||||| | |||||||||| | | ||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||| ||||||||    
T  23889931 tgtttttcctctattttctctatttatttctgtcaactctatcaaaaacctaccgatcctactaacgaaccgtgttacgttcctcgtgttttcgttcttt 23889832  T
Q  377 caccggccgaccgatcctacataggatctcgatcct 412  Q
    ||||||||||||| |||| | ||||| |||||||||    
T  23889831 caccggccgaccggtcctccgtaggacctcgatcct 23889796  T

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Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 264 - 421
Target Start/End: Complemental strand, 25100938 - 25100780
Alignment:
Q  264 tgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgtt-acgttccttg 362  Q
    |||||||||||||| |||| | ||||| |||| | | ||| | ||||||  |||||||||||||||||||||||||||||||| ||||| |||||||| |    
T  25100938 tgcttggttcctctatttttcctctatattctctgtttatatttctcaatactatcaacaacctaccgatcctacttacgaactgtgttaacgttcctcg 25100839  T
Q  363 tgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    | |||| |||| |||||||||||||| ||||||  |||||||| |||||| ||||||||    
T  25100838 tttttatgttccttcaccggccgaccaatcctatgtaggatcttgatcctaactacatt 25100780  T

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Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 303 - 396
Target Start/End: Complemental strand, 6539407 - 6539314
Alignment:
Q  303 tttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctac 396  Q
    |||||||| || ||||||||||| ||||||||||||||||||||| ||| | ||||||  ||||||||||| |||||| ||| |||||||||||    
T  6539407 tttctctcgaccctatcaacaacttaccgatcctacttacgaaccatgtaatgttcctaatgtttacgttccttcaccagcctaccgatcctac 6539314  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 338 - 421
Target Start/End: Original strand, 10875612 - 10875695
Alignment:
Q  338 cttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    |||||||||||||||| || ||| |||||||||||| | || ||||||||||| ||||| |||||||||||||| ||| |||||    
T  10875612 cttacgaaccgtgttatgtccctcgtgtttacgttcctacatcggccgaccgaacctacgtaggatctcgatcccgaccacatt 10875695  T

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Target: scaffold0325 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 264 - 421
Target Start/End: Original strand, 8547 - 8705
Alignment:
Q  264 tgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgt 363  Q
    ||||||||||||||||||| | |||||||||| | | |||||| |||||||||||||| |||||| |||||||| |||| |||||||| |||||||| ||    
T  8547 tgcttggttcctctgtttttcctctattttctctatttatttcactcaactctatcaaaaacctaacgatcctatttacaaaccgtgtcacgttcctcgt 8646  T
Q  364 g-tttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    | ||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  8647 gttttacgttcgttcaccggccgaccgatcctacgtaggatctccatcctgactacatt 8705  T

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Target: scaffold0302 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 267 - 421
Target Start/End: Original strand, 17295 - 17449
Alignment:
Q  267 ttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtt 366  Q
    ||||||||| ||| |||  |||||||||| | ||||||||||||||||||||||||||  || || |||||||||||||||||||||||||||| |||||    
T  17295 ttggttcctatgtattctttctattttctctgtctatttctctcaactctatcaacaaagtatcgctcctacttacgaaccgtgttacgttcctcgtgtt 17394  T
Q  367 tacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 421  Q
    |||||||||||||| |||| | |||||||| ||||||||||||||||| ||||||    
T  17395 tacgttctttcacctgccggcagatcctacgtaggatctcgatcctgattacatt 17449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0768 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0768
Description:

Target: scaffold0768; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 264 - 369
Target Start/End: Original strand, 4392 - 4495
Alignment:
Q  264 tgcttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgt 363  Q
    |||||| |||||||||||| | |||||||||| | | | ||||||||||||||||||||| |||| ||||||||||||||||| ||||||||  ||| ||    
T  4392 tgcttgtttcctctgtttttcctctattttctctgttt-tttctctcaactctatcaaca-cctatcgatcctacttacgaactgtgttacgaccctcgt 4489  T
Q  364 gtttac 369  Q
    ||||||    
T  4490 gtttac 4495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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