View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11240_low_8 (Length: 445)
Name: NF11240_low_8
Description: NF11240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11240_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 34441103 - 34441539
Alignment:
| Q |
1 |
ataagctattttgaagagctcagaaaaatagcgtgaaaacaagtcataaacatgtcataaataacctatttccataagttttctcaaacgctaataaata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34441103 |
ataagctattttgaagagctcagaaaaatagcgtgaaaacaagtcataaacatgtcataaataacctatttccataagttttctcaaacgccaataaata |
34441202 |
T |
|
| Q |
101 |
agttcaaactaatcaacccaaacacgctcttagaatgcaatttgtaaatttttgtcttagtagatttcctacttgtcaattgttacaaattcaatattgt |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34441203 |
agctcaaactaatcaacccaaacacgctcttagaatataatttgtaaatttttgtcttagtagatttcctacttgtcaattgttacaaattcaatattgt |
34441302 |
T |
|
| Q |
201 |
ctcatgatggtgaaacacaattgattcttcagattgcaaacctagggaacaaccaagtgaatctcaagatttctcttcaaggatatgtgagcaaaaactt |
300 |
Q |
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| T |
34441303 |
ctcatgatggtgaaacacaattgattcttcagattgcaaacctagggaacaaccaagtgaatctcaagatttctcttcaaggatatgtgagcaaaaacct |
34441402 |
T |
|
| Q |
301 |
agctgggtcaacaaagaccgttctcgcgtctcaaaatatacttgatgagaatagcttcacagaaccaaaaaaggttcatatatttcctttgttataaatt |
400 |
Q |
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| T |
34441403 |
agctgggtcaacaaagaccgttctcgcgtctcaaaatatacttgatgagaatagcttcacagaaccaaaaaaggttcatatatttcctttgttataaatt |
34441502 |
T |
|
| Q |
401 |
tgttacaaaaataaaaagaccagtgcatggatctaat |
437 |
Q |
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| T |
34441503 |
tgttacaaaaataaaaagaccagtgcatggatctaat |
34441539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 192 - 437
Target Start/End: Original strand, 34467025 - 34467274
Alignment:
| Q |
192 |
caatattgtctcatgatggtgaaacacaattgattcttcagattgcaaacctagggaacaaccaagtgaatctcaagatttctcttcaaggatatgtgag |
291 |
Q |
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| T |
34467025 |
caatattgtctgatgatgttgcaatgcaattgactcttcagattgcaaacataggaagcatcccagtgaatctcaagatttctcttcaaggatatgtgag |
34467124 |
T |
|
| Q |
292 |
caaaaacttagctgggtcaacaaagaccgttctcgcgtctcaaaatatacttgatgagaatagcttcacagaaccaaaaaaggtt----catatatttcc |
387 |
Q |
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| T |
34467125 |
caaaaacctagctgggtcaacgaagaccgttctcacgtctggaaatatacttgatgagaataccttcgcagcaccaaaaaaggttaatatatatatttcc |
34467224 |
T |
|
| Q |
388 |
tttgttataaatttgttacaaaaataaaaagaccagtgcatggatctaat |
437 |
Q |
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| T |
34467225 |
tttgttataaatttgttacataaatagaaagactggtgcatggatctaat |
34467274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 64 - 437
Target Start/End: Original strand, 34450978 - 34451345
Alignment:
| Q |
64 |
acctatttccataagttttctcaaacgctaataaataagttcaaactaatcaacccaaacacgctcttagaatgcaatttgtaaatttttgtcttagtag |
163 |
Q |
| |
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|||||||||||||| || |||||||| | |||||||||||| ||| | | ||| ||| ||||||||| || | |||||| | || |||||| ||| |
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| T |
34450978 |
acctatttccataaattctctcaaactcaaataaataagtttaaataagttaacttaaatgcgctcttagtatacgctttgtacaatt--gtcttaatag |
34451075 |
T |
|
| Q |
164 |
atttcctacttgtcaattgttacaaattcaatattgtctcatgatggtgaaacacaattgattcttcagattgcaaacctagggaacaaccaagtgaatc |
263 |
Q |
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||| ||||||||| |||||||||| | ||||||||||||||||| || ||| ||||||||| ||||||||||| | |||| | ||||||| || |
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| T |
34451076 |
attccctacttgtttattgttacaa-tgaaatattgtctcatgatgctgcaacgcaattgatttcgtagattgcaaacatgcggaaaacccaagtggatt |
34451174 |
T |
|
| Q |
264 |
tcaagatttctcttcaaggatatgtgagcaaaaacttagctgggtcaacaaagaccgttctcgcgtctcaaaatatacttgatgagaatagcttcacaga |
363 |
Q |
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||||||||||| |||| |||| || |||||||||| || |||||||||||||| |||||| | | |||| ||||||||||||||||||| |||| |
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| T |
34451175 |
tcaagatttctattcagggatttgcgagcaaaaacctaaaagggtcaacaaagactgttctcac---tggaaatgaacttgatgagaatagcttcgcaga |
34451271 |
T |
|
| Q |
364 |
accaaaaaaggttcatatatttcctttgttataaatttgttacaaaaataaaaagaccagtgcatggatctaat |
437 |
Q |
| |
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||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| || ||||||||||||| |
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| T |
34451272 |
accaaaaaaggttcatatatttcctctgttatatatttgttacaaaaataaaaagactagcgcatggatctaat |
34451345 |
T |
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