View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11240_low_9 (Length: 439)
Name: NF11240_low_9
Description: NF11240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11240_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 15 - 431
Target Start/End: Original strand, 21483625 - 21484041
Alignment:
| Q |
15 |
aaaattgttgtggaggtacaatgagaggtgtttgatctagccatgatgtttggttgaaacacgtgttcgattcaggtgcaaatgtgtttgctgtgttttg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
21483625 |
aaaattgttgtggaggtacaatgagaggtgtttgatctagccatgatgtttggttgaaacatgcgttcgattcaggtgcaaatgtgtttgctgtgttttg |
21483724 |
T |
|
| Q |
115 |
gttctgacacggatcttgaaaatgttgttgttgaggaacaatatttgaaggtattattgtgttcgtgttggcgttttctttgagtcttttgttgtgaaga |
214 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
21483725 |
gttctgacacggatcttgaaaatgatgttgttgaggaacaatatttgaaggtattattgtgttcgtgttggcgttttctttgagtcttttgttatgaaga |
21483824 |
T |
|
| Q |
215 |
tgactagtttgaacccattcaagaatgagcttcaacaattgtttcatcccttcttttccaccacctaatctcctagcagcactttcgatcgtcgatttct |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
21483825 |
tgactagtttgaacccattcaagaatgagcttcaacaattgtttcatcccttcttttccaccacctaatctcctagcagcactttcaatcgttgatttct |
21483924 |
T |
|
| Q |
315 |
taagcttcacattcctcaaatcattcgcggagacactgtctttgttcgatttaagccactccaagaaaaccatactcatttcatcacttacaccatcaca |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21483925 |
taagcttcacattcctcaaatcattcgcggagacactgtctttgttcgatttaagccactccaagaaaaccatactcatttcatcacttacaccatcaca |
21484024 |
T |
|
| Q |
415 |
tgcacctaattcatctc |
431 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
21484025 |
tgcacctaattcatctc |
21484041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University