View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11241_high_1 (Length: 855)
Name: NF11241_high_1
Description: NF11241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11241_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 625; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 25 - 837
Target Start/End: Original strand, 6840061 - 6840860
Alignment:
| Q |
25 |
taagcataagtatgagagggcatatacttacttgactaaaataaataaatatatcttactccctccattctcaaatataagcnnnnnnntcatannnnnn |
124 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
6840061 |
taagcataagtatgacagggcatatacttacttgactaaaataaataaatatatcttgctccctccattctcaaatataagcaaaaaattcatatttttt |
6840160 |
T |
|
| Q |
125 |
ncaagtttattgaataaccaatttatctagtttatcacatgctagctagctaggttgacaagggagttatgctctgcaaatactcatgaccccataaaca |
224 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6840161 |
tcaagtttattgaataaccaatgtatctagtttatcacatgctagctagctaggttgacaagggagttatgctctgcaaatactcatgacccaataaaca |
6840260 |
T |
|
| Q |
225 |
tctatcatacttcaatagataaatttgagattcgctatgcaggtttccttgatcttcatacgaagtcaacaactgtccaacctttcctccaaaaactcga |
324 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
6840261 |
tctatcatacttcaataga--agtttgagattcgctatgcaggtttccttgatcttcatacgaagtcagcagctgtccaacctttcctccaaaaactcga |
6840358 |
T |
|
| Q |
325 |
tcgccatccttccaaaaaccacgtctgcaacaagtccactcaaccagtccaatgttgtactttttagcccacccactttgatccatagtccaaatttcca |
424 |
Q |
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| T |
6840359 |
tcgccatccttccaaaaaccacgtctgcaacaagtccactcaaccggtccaatgttgtactttttagcccacccgctttgatccataatccaaatttcca |
6840458 |
T |
|
| Q |
425 |
actagataggactaggaagatgatactccaaaacataagcaagtgaacccttgatctcggcaatgttttcaatagagttttcaacagcaatacgcggagc |
524 |
Q |
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| T |
6840459 |
actggataggactaggaagatgatactccaaaacataagcaagtgaacccttgatctcggcaatgttttcaatagaatgttcaacagcaatacgcggagc |
6840558 |
T |
|
| Q |
525 |
tttgagttcgtgaaactgattgttgcgaaagtcaaaacaaagaatgttttaaatagtnnnnnnnttaacggttgtaatccaataataaacgcagttaaca |
624 |
Q |
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| T |
6840559 |
tttgagttcgtgaaactgattgttgcgaaagtcaaaacaaagaatgtttgaaatagtaaaaaaattaacggctgtaatccaataataaacgcagttaaca |
6840658 |
T |
|
| Q |
625 |
accggtgtataagcaggattataatgaactgtgatccagttaaaaggaggaggatggacaggggtccatgactgagtgcttagatcataaacttctactc |
724 |
Q |
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| T |
6840659 |
accggtgtataagcaggattataatgaattgtgatccagttaaaaggaggaggatggacaggggtccatgactga-----------ataaaattctgctc |
6840747 |
T |
|
| Q |
725 |
ccgaagcataaagcatcggcttcccaacgacaacgtcatgttgaagtctaacaactttgaaattatttatatccttaaaggcacaaaaaccatacaagga |
824 |
Q |
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| T |
6840748 |
ccgaagcataaagcatcggcttccctacgacaacgtcatgttgaagtctaacaactttgaaattatttatatccttaaaggcacaaaaaccatacaagga |
6840847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 172 - 720
Target Start/End: Complemental strand, 1178691 - 1178140
Alignment:
| Q |
172 |
agctaggttgacaagggagttatgctctgcaaatactcatgaccccataaacatctatcatacttcaatagataaatttgagattcgctatgcaggtttc |
271 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || ||||| | |||||||||| | ||||| || ||| | |
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| T |
1178691 |
agctaggttgacaagggagttatgctctgtaaatactcagaaccccataaacatctatagtaattcaaaacataaatttgaaaatcgctgagcgagttgc |
1178592 |
T |
|
| Q |
272 |
cttgatcttcatacgaagtcaacaactgtccaacctttcctccaaaaactcgatcgccatccttccaaaaaccacgtctgcaacaagtccactcaaccag |
371 |
Q |
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| T |
1178591 |
cttgatcgtcatatgatgccagcaactttccaacctttcctccaaagacttgatcgccatccttccagaaatcacttatgcaacatgtccacggaactgg |
1178492 |
T |
|
| Q |
372 |
tccaatgttgtactttttagcccacccactttgatccatagtccaaatttccaactagataggactaggaagatgatactccaaaacataagcaagtgaa |
471 |
Q |
| |
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||||||||||| |||| | ||||| | ||||||||| |||| |||||||||| | | ||||||||| ||||||||||||||| ||||||||| || |
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| T |
1178491 |
cccaatgttgtaaattttggtccaccggttctgatccataatccagatttccaactgggtcggactaggatgatgatactccaaaatataagcaagggag |
1178392 |
T |
|
| Q |
472 |
cccttgatctcggcaatgttttcaatagagttttcaacagcaatacgcggagctttgagttcgtgaaactgattgttgcgaaagtcaaaacaaagaatgt |
571 |
Q |
| |
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||||||||||| || || ||||| |||| | || |||| || ||||||||||||| |||||||||||||||| |||||||||| || | |||| |
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| T |
1178391 |
cccttgatctcagcgatattttcgctagaatgttgaacatgccgacagggagctttgagttggtgaaactgattgttgtgaaagtcaaagcagatgatgt |
1178292 |
T |
|
| Q |
572 |
tttaaatagtnnnnnnnttaacggttgtaatccaataataaacgcagttaacaaccggtgtataagcaggattataatgaactgtgatccagttaaaa-- |
669 |
Q |
| |
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|| || |||| | || || |||||||| |||||| |||||||||||||| ||||| | ||||| || |||||| ||| | ||||||| |
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| T |
1178291 |
ttgaagtagtatacaaatcgacagtaacaatccaatgataaacacagttaacaaccggggtatatgatggattgtatcgaactgggatgcggttaaaaga |
1178192 |
T |
|
| Q |
670 |
-ggaggaggatggacaggggtccatgactgagtgcttagatcataaacttct |
720 |
Q |
| |
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| T |
1178191 |
tggagggtgatggacaggggtccatgatttagtgcttagatcatacacttct |
1178140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 373 - 494
Target Start/End: Original strand, 7496652 - 7496773
Alignment:
| Q |
373 |
ccaatgttgtactttttagcccacccactttgatccatagtccaaatttccaactagataggactaggaagatgatactccaaaacataagcaagtgaac |
472 |
Q |
| |
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||||||||||||||||| |||||| | |||||||||| |||||||||||||| | |||| | || ||||||||||||||||||||||||| |||| |
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| T |
7496652 |
ccaatgttgtacttttttgcccactttccttgatccataacccaaatttccaactgtgtcggacaaagatgatgatactccaaaacataagcaagagaac |
7496751 |
T |
|
| Q |
473 |
ccttgatctcggcaatgttttc |
494 |
Q |
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| T |
7496752 |
ccttgatctcggctatattttc |
7496773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 560
Target Start/End: Complemental strand, 7873510 - 7873477
Alignment:
| Q |
527 |
tgagttcgtgaaactgattgttgcgaaagtcaaa |
560 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| |
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| T |
7873510 |
tgagttcgtgaaactggttgttgcgaaagtcaaa |
7873477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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