View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11241_high_13 (Length: 304)
Name: NF11241_high_13
Description: NF11241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11241_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 2244773 - 2244629
Alignment:
| Q |
1 |
agatgatatatagccacccaatttcgtccataagagcacatgggttgtgcgggtggcggtttgaacgggtggtaagcgactcaaatacttcacacac--g |
98 |
Q |
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| T |
2244773 |
agatgatatatagccacccaatttcgtccat----------gggttgtgcgggtggcggtttgaacgggtggtaagcgactcaaatacttcacacacacg |
2244684 |
T |
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| Q |
99 |
ttcgatctctgacttttccgtatgaaaaaatctgatttacagaggagaatatatc |
153 |
Q |
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| T |
2244683 |
ttcgatctctgacttttccgtatgaaaaaatctgatttacaaaggagaatatatc |
2244629 |
T |
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Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 185 - 285
Target Start/End: Complemental strand, 2244628 - 2244532
Alignment:
| Q |
185 |
atcaatgctgaatatacctactaacaaacttatccaagatcgatgaaggtgaaaagaggtacatagtggacaagatttctgaagacattcttagttcttt |
284 |
Q |
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| T |
2244628 |
atcaatgctgaatatacctactaacaaacttatccaagat----gaaggtgaaaagaggtacatagtggacaagatttctgaagacattcttagttcttt |
2244533 |
T |
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