View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11241_high_14 (Length: 281)

Name: NF11241_high_14
Description: NF11241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11241_high_14
NF11241_high_14
[»] chr6 (2 HSPs)
chr6 (21-222)||(12833762-12833952)
chr6 (196-250)||(28843925-28843979)
[»] chr2 (1 HSPs)
chr2 (193-250)||(15401320-15401377)
[»] chr1 (2 HSPs)
chr1 (193-250)||(29407729-29407786)
chr1 (193-250)||(34735745-34735802)
[»] chr3 (1 HSPs)
chr3 (194-250)||(8369401-8369457)


Alignment Details
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 12833762 - 12833952
Alignment:
Q  21 taaagataaatatgaatgataatgtaagtcataaccaacataacaaaatataataggggttagaaagtattcatgaatttatgtccttggatcataactc 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||           
T  12833762 taaagataaatatgaatgataatgtaagtcataaccaacataacaaaatataataggggttagaaagtattcatgaatttatgtccttagatc------- 12833854  T
Q  121 gatcaatcaagaaatttcacataagaatacgaaattaggaaatgcttacttatgtcaaatgtaatttatgccaaatgtaactcggtttgaaagaaatgat 220  Q
        ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12833855 ----aatcaagaaatttcacataagaatacgaaatcaggaaatgcttacttatgtcaaatgtaatttatgccaaatgtaactgggtttgaaagaaatgat 12833950  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 28843979 - 28843925
Alignment:
Q  196 tgtaactcggtttgaaagaaatgatagagtagagagaggaatatgtgttattaaa 250  Q
    ||||||| ||||| | |||||||||||||| |||||||||||||||| |||||||    
T  28843979 tgtaactaggtttaagagaaatgatagagtggagagaggaatatgtgctattaaa 28843925  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 15401320 - 15401377
Alignment:
Q  193 aaatgtaactcggtttgaaagaaatgatagagtagagagaggaatatgtgttattaaa 250  Q
    |||||||||  | |||||||||||||||||||||| ||||||||||||||||||||||    
T  15401320 aaatgtaacgggctttgaaagaaatgatagagtagggagaggaatatgtgttattaaa 15401377  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 29407729 - 29407786
Alignment:
Q  193 aaatgtaactcggtttgaaagaaatgatagagtagagagaggaatatgtgttattaaa 250  Q
    |||||||||| ||||| |||||||||||||||| |||||||||||||||| |||||||    
T  29407729 aaatgtaactaggtttaaaagaaatgatagagtggagagaggaatatgtgctattaaa 29407786  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 34735745 - 34735802
Alignment:
Q  193 aaatgtaactcggtttgaaagaaatgatagagtagagagaggaatatgtgttattaaa 250  Q
    |||||||||  | |||||||||||||||||||||| ||||||||||||||||||||||    
T  34735745 aaatgtaacaagctttgaaagaaatgatagagtagggagaggaatatgtgttattaaa 34735802  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 8369457 - 8369401
Alignment:
Q  194 aatgtaactcggtttgaaagaaatgatagagtagagagaggaatatgtgttattaaa 250  Q
    |||||| || ||||| |||||||||||||||||||||||  ||||||| ||||||||    
T  8369457 aatgtagctaggtttaaaagaaatgatagagtagagagaaaaatatgttttattaaa 8369401  T

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