View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11241_low_11 (Length: 313)
Name: NF11241_low_11
Description: NF11241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11241_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 44884021 - 44883844
Alignment:
| Q |
13 |
gagaagaacatgtttaattattcaattgctaatcttcgagttcgtgttgatcatgacgatgatggtagcggggcgaagcaagagcagaggcttaggatgg |
112 |
Q |
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| T |
44884021 |
gagaagaacatgtttaattattcaattgctaatcttcgagttcgtgttgatcatgacgatgatggtagcggggtgaagcaagagcagaggcttaggatgg |
44883922 |
T |
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| Q |
113 |
aacaacagcatgataacaactttgataatgtga---agcaaaacgatccttttcttgaatcttcttattgtcacgatg |
187 |
Q |
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| T |
44883921 |
aacaacagcatgaaaacaactttgataatgtgaagcagcaaaacgatccttttcttgaatcttcttattgtcacgatg |
44883844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 183 - 295
Target Start/End: Complemental strand, 44883806 - 44883694
Alignment:
| Q |
183 |
cgatgatcgaaagcctcctttgccatcgctcattgttcaaccaaggaccaccggagctagccttggtttgccttctccagattcactagcaaggtaatat |
282 |
Q |
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| T |
44883806 |
cgatgatcgaaagcctcctttgccgtcgctcattgttcaaccaaggaccaccggagctagccttggtttgccttctccagattcactagcaaggtaatat |
44883707 |
T |
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| Q |
283 |
tcaactatcataa |
295 |
Q |
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| T |
44883706 |
tcaactatcataa |
44883694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 8994496 - 8994574
Alignment:
| Q |
17 |
agaacatgtttaattattcaattgctaatcttc---------gagttcgtgttgatcatgacgatgatggtagcggggc |
86 |
Q |
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| T |
8994496 |
agaacatgtttaattattcagttgctaatcttcctgaaattcgagttcgtgttgatcatgatgacgatggtagcggggc |
8994574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 9007256 - 9007334
Alignment:
| Q |
17 |
agaacatgtttaattattcaattgctaatcttc---------gagttcgtgttgatcatgacgatgatggtagcggggc |
86 |
Q |
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| T |
9007256 |
agaacatgtttaattattcagttgctaatcttcctgaaattcgagttcgtgttgatcatgatgacgatggtagcggggc |
9007334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 86
Target Start/End: Original strand, 9029192 - 9029231
Alignment:
| Q |
47 |
ttcgagttcgtgttgatcatgacgatgatggtagcggggc |
86 |
Q |
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| T |
9029192 |
ttcgagttcgtgttgatcatgatgacgatggtagcggggc |
9029231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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