View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11241_low_12 (Length: 311)
Name: NF11241_low_12
Description: NF11241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11241_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 43001380 - 43001099
Alignment:
| Q |
18 |
catcactgaagcagcactcaaaatatcaagtgaagaaacattaacttcatggttccattttttacctgatgtcatcgagttagttttagctgcatatgac |
117 |
Q |
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| T |
43001380 |
catcactgaagcagcactcaaaatatcaagtgaagaaacattaacttcatgattccattttttacctgatgccatcaagttagttttagctgcatatgac |
43001281 |
T |
|
| Q |
118 |
ttccctagcttaccaacatctttcctcttcagtttctcaaaacattcagatttgtgattcttgtagtagaactcaacgcagtctgcagttgtcttgtgat |
217 |
Q |
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| T |
43001280 |
ttccctagcttaccaatatctttcctcttcagtttctcaaaacattcggatttgtgattcttgtagtagaactcaatgcagtctgcagttgtcttgtgat |
43001181 |
T |
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| Q |
218 |
caaggaaagaagcaattttccggaaatcttttccaaatgcagcaaatttcttcaagaataactctttctcttctgatgtcca |
299 |
Q |
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| T |
43001180 |
caaggaaagaagcaattttccggaaatcttttccaaatgcagcaaatttctccaagaatagttctttctcttctgatgtcca |
43001099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 134 - 299
Target Start/End: Complemental strand, 10696264 - 10696099
Alignment:
| Q |
134 |
catctttcctcttcagtttctcaaaacattcagatttgtgattcttgtagtagaactcaacgcagtctgcagttgtcttgtgatcaaggaaagaagcaat |
233 |
Q |
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| T |
10696264 |
catctttcttcttgattttctcaaaacaatcagacttgtgatttttgtagtagaattccacacagtccgctgttgtcttgtggtcaaggaaagtagaaat |
10696165 |
T |
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| Q |
234 |
tttccggaaatcttttccaaatgcagcaaatttcttcaagaataactctttctcttctgatgtcca |
299 |
Q |
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| T |
10696164 |
tttttgaaaatcttttccaaaggcagcaaatttctccaagaaaacctctttctcttctgaagtcca |
10696099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 150 - 275
Target Start/End: Original strand, 10695368 - 10695493
Alignment:
| Q |
150 |
tttctcaaaacattcagatttgtgattcttgtagtagaactcaacgcagtctgcagttgtcttgtgatcaaggaaagaagcaattttccggaaatctttt |
249 |
Q |
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|||||||||||| ||||| || ||||| ||||| ||||| ||||| |||||||| ||||||||||| |||||||||| || |||||| || ||||||||| |
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| T |
10695368 |
tttctcaaaacaatcagacttatgatttttgtattagaattcaacacagtctgctgttgtcttgtggtcaaggaaagtagaaatttttcgaaaatctttt |
10695467 |
T |
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| Q |
250 |
ccaaatgcagcaaatttcttcaagaa |
275 |
Q |
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||||| || |||||||||| |||||| |
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| T |
10695468 |
ccaaaggccgcaaatttctccaagaa |
10695493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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