View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11241_low_16 (Length: 281)
Name: NF11241_low_16
Description: NF11241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11241_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 12833762 - 12833952
Alignment:
| Q |
21 |
taaagataaatatgaatgataatgtaagtcataaccaacataacaaaatataataggggttagaaagtattcatgaatttatgtccttggatcataactc |
120 |
Q |
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| T |
12833762 |
taaagataaatatgaatgataatgtaagtcataaccaacataacaaaatataataggggttagaaagtattcatgaatttatgtccttagatc------- |
12833854 |
T |
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| Q |
121 |
gatcaatcaagaaatttcacataagaatacgaaattaggaaatgcttacttatgtcaaatgtaatttatgccaaatgtaactcggtttgaaagaaatgat |
220 |
Q |
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| T |
12833855 |
----aatcaagaaatttcacataagaatacgaaatcaggaaatgcttacttatgtcaaatgtaatttatgccaaatgtaactgggtttgaaagaaatgat |
12833950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 28843979 - 28843925
Alignment:
| Q |
196 |
tgtaactcggtttgaaagaaatgatagagtagagagaggaatatgtgttattaaa |
250 |
Q |
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| T |
28843979 |
tgtaactaggtttaagagaaatgatagagtggagagaggaatatgtgctattaaa |
28843925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 15401320 - 15401377
Alignment:
| Q |
193 |
aaatgtaactcggtttgaaagaaatgatagagtagagagaggaatatgtgttattaaa |
250 |
Q |
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| T |
15401320 |
aaatgtaacgggctttgaaagaaatgatagagtagggagaggaatatgtgttattaaa |
15401377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 29407729 - 29407786
Alignment:
| Q |
193 |
aaatgtaactcggtttgaaagaaatgatagagtagagagaggaatatgtgttattaaa |
250 |
Q |
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| T |
29407729 |
aaatgtaactaggtttaaaagaaatgatagagtggagagaggaatatgtgctattaaa |
29407786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 34735745 - 34735802
Alignment:
| Q |
193 |
aaatgtaactcggtttgaaagaaatgatagagtagagagaggaatatgtgttattaaa |
250 |
Q |
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||||||||| | |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34735745 |
aaatgtaacaagctttgaaagaaatgatagagtagggagaggaatatgtgttattaaa |
34735802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 8369457 - 8369401
Alignment:
| Q |
194 |
aatgtaactcggtttgaaagaaatgatagagtagagagaggaatatgtgttattaaa |
250 |
Q |
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|||||| || ||||| ||||||||||||||||||||||| ||||||| |||||||| |
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| T |
8369457 |
aatgtagctaggtttaaaagaaatgatagagtagagagaaaaatatgttttattaaa |
8369401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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