View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11241_low_2 (Length: 705)
Name: NF11241_low_2
Description: NF11241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11241_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 387 - 688
Target Start/End: Complemental strand, 14324570 - 14324278
Alignment:
| Q |
387 |
aaatcaacaccgatcaaatcattgtttcaacggtaagaatatagagactacgaatttgactttaaagtgacgacaatagttatcgttaaagtttaagcga |
486 |
Q |
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| T |
14324570 |
aaatcaacaccgatcaaatcattgtttcaaccgtaaaaatatagagactacgaatttgactttaaagtggcgacaatagttatcgttaaagtttaagcga |
14324471 |
T |
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| Q |
487 |
tatttaagcatcggtctaccgtataccaaattcgacacttccccaacttaacaattttcaattaactgtaagtgaattggaagaagggtacaaattattt |
586 |
Q |
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| T |
14324470 |
aatttaagcatcggtctacc-tataccaaattcgacacttccccaacttaacaattttcaattaactgtaagtgaattggaagaagggtacaaatta--- |
14324375 |
T |
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| Q |
587 |
aagggtacattggaagtattgtaatgcagtattgacttctgaatcagttaaatcactgtttagggcaaaggtattgttctgagcataacttccattgtct |
686 |
Q |
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| T |
14324374 |
-----tacattggaagcattgtgacgcagtattgacttctgaatcagttaaatcactgtttagggcaaaggtatcgttctgagcataacttccattgtct |
14324280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 14324941 - 14324657
Alignment:
| Q |
1 |
ggttatctttatgttggatcatagctcaccatcaaatgttgatgatagatgggtgaagttgtccaagaggaaatgactactactaaatcaatgtcgatgt |
100 |
Q |
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| T |
14324941 |
ggttatctttatattggatcatagctcaccatcaaatgttgatgaaagatgggtgaagctgtccaagaggaaatgactactactaaatcagtgtcgatgt |
14324842 |
T |
|
| Q |
101 |
gaaatttatcccgaacgcggctctcatcccacattgaataaaaacggtcaatatagtatttaagttatgcggttctaccactcaatgggctagtctttgg |
200 |
Q |
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| T |
14324841 |
gaaatttgtcacggacgcggctctcatcccacattgaataaaaatgatcaatatagtatttaagttatgcggttctaccacttgatgggctagtctttgg |
14324742 |
T |
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| Q |
201 |
gttaaactatttttgagcttaattcgtaatgtgttgaat----caaaaaataaagaaaagtaaatattagtgtcttagaattcat |
281 |
Q |
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| T |
14324741 |
gttaaactatttttgagcttaaattgtaatgtgttgaatcaaccaaaaaataaagaaaagtaaatattagtgtcttagaattcat |
14324657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 14324643 - 14324588
Alignment:
| Q |
237 |
aatcaaaaaataaagaaaagtaaatattagtgtcttagaattcatacatatgtttt |
292 |
Q |
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| T |
14324643 |
aatcaaaaaataaacaagagtaaatattagtgtcttagaatacaaacatatgtttt |
14324588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 389 - 417
Target Start/End: Complemental strand, 15495036 - 15495008
Alignment:
| Q |
389 |
atcaacaccgatcaaatcattgtttcaac |
417 |
Q |
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| T |
15495036 |
atcaacaccgatcaaatcattgtttcaac |
15495008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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