View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11241_low_20 (Length: 238)
Name: NF11241_low_20
Description: NF11241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11241_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 35094421 - 35094218
Alignment:
| Q |
17 |
gagatattaggaagtggttgtcacagttcatcctataaggctgctttgttgactggccctactgttgtcgtcaaaagatacaaacaaatgaacaatgtta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35094421 |
gagatattaggaagtggttgtcacagttcatcctataaggctgctttgttgactggccctactgttgtcgtcaaaagatacaaacaaatgaacaatgtta |
35094322 |
T |
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| Q |
117 |
ataggccagagtttcaagagcacatgagaagactgggaaggttgaatcatccgaatctccttcctctcgtagcttactactacaaaagagacgagaaact |
216 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35094321 |
ataggccagagtttcaagagcacatgagaagactaggaaggttgaatcatccgaatctccttcctctcgtagcttactactacaaaagagacgagaaact |
35094222 |
T |
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| Q |
217 |
tttc |
220 |
Q |
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|||| |
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| T |
35094221 |
tttc |
35094218 |
T |
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