View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11241_low_4 (Length: 524)
Name: NF11241_low_4
Description: NF11241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11241_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 2e-81; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 15 - 270
Target Start/End: Complemental strand, 35967779 - 35967488
Alignment:
| Q |
15 |
gagatgaatggaggaatagagatgtgaaatgaaaattaaaattataaggtatct----------------acttaaattagtggtcattttcaaccatta |
98 |
Q |
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| T |
35967779 |
gagatgaatggaggaatagagatgtgaaatgaaaattaaaattataaggtatcttaaatgtgtggcaactacttaaattagtggtcattttcaaccatta |
35967680 |
T |
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| Q |
99 |
atagagggata--------------------tttttccagtatatgtatgtaagagagaaaaggaattttgttgtgtttgaaaaatattgtgacagaaga |
178 |
Q |
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| T |
35967679 |
atagagggatagaaatcccctcccgtcactatttttccagtatatgtatgtaagagagagaaggaattttgttgtgtttgaaaaatattgtgacagaaga |
35967580 |
T |
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| Q |
179 |
gaagatgcaaccacaaccagactcatgtgctacttttctctaaaataaagtttttattataataaactctaattgcaatttatcacgtgact |
270 |
Q |
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| T |
35967579 |
gaagatgcaaccacaaccagactgatgtgctacttttctcaaacataaagtttttattataataaactctaattgcaatttgtcacgtgact |
35967488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 281 - 461
Target Start/End: Complemental strand, 35967280 - 35967098
Alignment:
| Q |
281 |
atgcacgtggaaaatgttgaatgatcaatcaataaacacacattccataactacagcctttcgctttcagctttgtattctttttcttgtgttataa--t |
378 |
Q |
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| T |
35967280 |
atgcacgtggaaaatgttgaatgatcaatcaataaacacacattccaaaactacagcctttcgctttcagctttgtattctttttcttgtgttataactt |
35967181 |
T |
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| Q |
379 |
acctgttttgtttatatagattctttaatctttataggttaacgtttcttttttgtgcatagattttacaatttttatcattt |
461 |
Q |
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| T |
35967180 |
ataatacctgtttatatagattctttaatctttataggttaacgtttcttttttgtgcatagattttacaatttttatcattt |
35967098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 35967079 - 35967030
Alignment:
| Q |
453 |
ttatcattttctatcctacttagattaacggtgagtttgaaggaattatg |
502 |
Q |
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| T |
35967079 |
ttatgattttctatcctacttaaattaacggtgagtttgacggaattatg |
35967030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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