View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11241_low_6 (Length: 410)
Name: NF11241_low_6
Description: NF11241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11241_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 5716655 - 5716780
Alignment:
| Q |
6 |
aggagcacagacctaagtcccaaatcaatatgatctcacgcttgttattttgtagttttaaaacaagattgtctttgatagtatgatacccatgagtttc |
105 |
Q |
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| T |
5716655 |
aggagcacactcctaaatcccaagccaatatgatctcacccttgttattttgtagtttttaaacaagactgtctttgataatatgatacccttgagtttc |
5716754 |
T |
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| Q |
106 |
ataaaattaattgtttatagatcaca |
131 |
Q |
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| T |
5716755 |
ataaaattaattgtttatagatcaca |
5716780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 5716923 - 5716854
Alignment:
| Q |
184 |
atagcaatttttatatcattagaatttaggactgtatttctaaataaactcatgtgatggattatatagt |
253 |
Q |
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| T |
5716923 |
atagcaatttttatatcattagaatttaggactgtatttctaaataaactcatgtaatggattatatagt |
5716854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 391
Target Start/End: Original strand, 5716992 - 5717120
Alignment:
| Q |
266 |
aaatatattggctccggtaata---atttgataaaatagaataatcaaacttaattatacatttcagtatcgtgttggtgtcaaatactgatatatgttg |
362 |
Q |
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| T |
5716992 |
aaatatattggctccagtaatattaatttgataaa-tagaataatcaaatttaattatacatgtttgtgtcgtattagtgtcagatattgatatatgtta |
5717090 |
T |
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| Q |
363 |
gatacagaacacat-cttaatttgaagtgt |
391 |
Q |
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| T |
5717091 |
gacattgaacatatccttaatttgaagtgt |
5717120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 5716975 - 5716937
Alignment:
| Q |
146 |
catatatatgtcggtgcttcagaacttctaacattaata |
184 |
Q |
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| T |
5716975 |
catatatatgtcggtgctttagagcttctaacattaata |
5716937 |
T |
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