View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11241_low_7 (Length: 400)
Name: NF11241_low_7
Description: NF11241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11241_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 168 - 391
Target Start/End: Complemental strand, 6450814 - 6450591
Alignment:
| Q |
168 |
ttctattaagagttgtacatgcaatacttaagagtgaagacaaagcatggaaggaagtgcaagtaggaattttagaaatgattccaaacaatcgtctgct |
267 |
Q |
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| T |
6450814 |
ttctattaagagttgtacatgcaatacttaagagtcaagacaaagcatggaaggaagtgcaagtaggaattttagaaatgattccaaacaatcgtctgct |
6450715 |
T |
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| Q |
268 |
tccaacgttaacatttaaaaattgaaaccctagcatttgtctaattatgtaatgttgcaatccaatattccctctccgtgttcaaatattccatgtcttg |
367 |
Q |
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| T |
6450714 |
tccaacgttaacatttaaaaattgaaaccctagcatttgtctaattatgtaatgttgcaatccaatattccctctccgtgttcaaatattccatgtcttg |
6450615 |
T |
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| Q |
368 |
tgtgtctctcacctcaattcatct |
391 |
Q |
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| T |
6450614 |
tgtgtctctcacctcaattcatct |
6450591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 6450907 - 6450841
Alignment:
| Q |
63 |
atacatgactcataataataatactataaattacctcaattcattcactatgaataatacggaattacaattg |
135 |
Q |
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|||||||||||||||| |||||||||| ||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
6450907 |
atacatgactcataat---aatactataa---acctcaattcattaactatcaataatacggaattacaattg |
6450841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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