View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11241_low_8 (Length: 384)
Name: NF11241_low_8
Description: NF11241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11241_low_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 4 - 384
Target Start/End: Original strand, 10190325 - 10190702
Alignment:
| Q |
4 |
agcagcacagacatcgttcaaatttactatgaaatttatgtataacttaccataccaagtgcaacattctggttttgaattcaagtcacggtagatgtca |
103 |
Q |
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| T |
10190325 |
agcaccacaaacatcgttcaaatttactatgaaatttatgtataacttaccataccaagtgcaacattctggttttgaattcaagtcacggtagatgtca |
10190424 |
T |
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| Q |
104 |
tggttgaatttctttgatatttaattttgaaggattacataaacaacccaaatgctgcatttaaataaataaacattgatgtataagttttgtcaagtta |
203 |
Q |
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| T |
10190425 |
tggttgaatttctttgatatttaattttgaaggattacataaacaacccaaatgctgcatttaaataaataaacattgatgtataagttttgtcaagttg |
10190524 |
T |
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| Q |
204 |
gtcccaaaatggaaatttgaataactgaattaaatataactacaatatagtggcatatcattgatccattaatggagaagaaagttattaccaagttgaa |
303 |
Q |
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| T |
10190525 |
gtcccaaaatggaaatttgaataactgaattaaatataactcccgtatagtggcatatcattgatccat---tggagaagaaagttattaccaagttgaa |
10190621 |
T |
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| Q |
304 |
ttgttaagtacacgtttacagtacaatgaaatagtcataccagcaaacaaaaccattggacttgccgctgtttcttccttc |
384 |
Q |
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| T |
10190622 |
ttgtgaagtacacgtttacagtacaatgaaatagtcacaccagcaaacaaaaccattggacttgccgctgtttcttccttc |
10190702 |
T |
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