View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11241_low_9 (Length: 349)
Name: NF11241_low_9
Description: NF11241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11241_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 14818215 - 14817882
Alignment:
| Q |
1 |
attggatcaatctaacactacacatattaaaagacaaaacaaagattaaaaatctaaaatatcaaagtaacgcgggatattgcaactcaacaagaagctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14818215 |
attggatcaatctaacactacacatattaaaagacaaaacaaagattaaaaatctaaaatatcaaagtaacgcgggatattgcaactcaacaagaagctt |
14818116 |
T |
|
| Q |
101 |
ctctcttcccttctaggtctccattctcaacctaagaaaattgtggctgccacccatctagttctatgttttctcacataatatgcactctcatcagtca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14818115 |
ctctcttcccttctaggtctccattctcaacctaagaaaattgtggctgccacccatctagttctatgttttctcacataatatgcactctcatcagtca |
14818016 |
T |
|
| Q |
201 |
tcactacaatagctgcggcgacaactaggtggaggagttttgtttcatccttcttaacatgtattctctcgtcaccattaaatttcctcactgctggtga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14818015 |
tcactacaatagctgcggcgacaactaggtggaggagttttgtttcatccttcttaacatgtattctctcgtcaccattaaatttcctcactgctggtga |
14817916 |
T |
|
| Q |
301 |
aatccctcatcgtcggtgtcagtttcgttgagat |
334 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
14817915 |
aatccctcatcgtcggtgtcagtttcgttgagat |
14817882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 15265212 - 15264879
Alignment:
| Q |
1 |
attggatcaatctaacactacacatattaaaagacaaaacaaagattaaaaatctaaaatatcaaagtaacgcgggatattgcaactcaacaagaagctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15265212 |
attggatcaatctaacactacacatattaaaagacaaaacaaagattaaaaatctaaaatatcaaagtaacgcgggatattgcaactcaacaagaagctt |
15265113 |
T |
|
| Q |
101 |
ctctcttcccttctaggtctccattctcaacctaagaaaattgtggctgccacccatctagttctatgttttctcacataatatgcactctcatcagtca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15265112 |
ctctcttcccttctaggtctccattctcaacctaagaaaattgtggctgccacccatctagttctatgttttctcacataatatgcactctcatcagtca |
15265013 |
T |
|
| Q |
201 |
tcactacaatagctgcggcgacaactaggtggaggagttttgtttcatccttcttaacatgtattctctcgtcaccattaaatttcctcactgctggtga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15265012 |
tcactacaatagctgcggcgacaactaggtggaggagttttgtttcatccttcttaacatgtattctctcgtcaccattaaatttcctcactgctggtga |
15264913 |
T |
|
| Q |
301 |
aatccctcatcgtcggtgtcagtttcgttgagat |
334 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
15264912 |
aatccctcatcgtcggtgtcagtttcgttgagat |
15264879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 17503936 - 17504142
Alignment:
| Q |
17 |
actacacatattaaaagacaaaacaaagattaaaaatctaaaatatcaa--------agtaac----gcgggatattgcaactcaacaagaagcttctct |
104 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
17503936 |
actacacatattaaaagacaaaacaaagattaaaaatctaaaatatcaatactctgaagtaacttgggcgggatattgcaactcaacaagaagcttctct |
17504035 |
T |
|
| Q |
105 |
cttcccttctaggtctccattctcaacctaagaaaattgtggctgccacccatctagttctatgttttctcacataatatgcactctcatcagtcatcac |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
17504036 |
cttcccttctaggtctccattctcaacctaagaaaattgtggctgccacccatctagttctatgttttctc----aatatgcactcttatcagtcatcac |
17504131 |
T |
|
| Q |
205 |
tacaatagctg |
215 |
Q |
| |
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||||||||||| |
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|
| T |
17504132 |
tacaatagctg |
17504142 |
T |
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