View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11242_low_1 (Length: 960)
Name: NF11242_low_1
Description: NF11242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11242_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 13 - 466
Target Start/End: Complemental strand, 43408050 - 43407603
Alignment:
| Q |
13 |
atctccctctcccattcccataggaatattattattgttggacatgtattgtgattgtggcgtagtttgctgcatggacatcaaactgttctcacttgct |
112 |
Q |
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| T |
43408050 |
atctccctctcccattcccataggaatattattattgttggacatgtattgtgattgtggcgtagtttgctgcatggccatcaaactattctcacttgct |
43407951 |
T |
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| Q |
113 |
tcaatccagcaaccttctcccaagagctcctcaattatatctgcttgatnnnnnnnnnnnnnnnnnnnnnncaccatcggtccaaacacaccaccgtcag |
212 |
Q |
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| T |
43407950 |
tcaatccagcaaccttctcccaacagctcctcaattatatctgcttgatctcctcctcctcctcc------caccatcggtccaaacacaccaccgtcag |
43407857 |
T |
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| Q |
213 |
ccactaacccaccaccatattccatccttataattaaagttctttctcagatcctcctatataaaaagatcagaagatatcattcatgtcaagatatata |
312 |
Q |
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| T |
43407856 |
ccactaacccaccaccatattccatccttataattaaagttgtttctcagatcctcctatataaaaagatcagaagatatcattcatgtcatgatatata |
43407757 |
T |
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| Q |
313 |
ttagagaaagggaatgaagaagagagtgaatt----aattaattaaagtagttgaggagaacacgtacgtagtagaataataagtacgcaaattaaagag |
408 |
Q |
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| T |
43407756 |
ttagagaaagggaatgaagga-agagtcaattattaaattaagttaagtagttgaggagaacacgtac---gtagaataataagtacggaaattaaagag |
43407661 |
T |
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| Q |
409 |
aaatgaaaaaaggaaataaataaggtatgtgatgtgtgtgtagctgcaggcaggatag |
466 |
Q |
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| T |
43407660 |
aaatgaaacaaggaaataaattaggtatgtgatgtgtgtgaagctgcaggcaggatag |
43407603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 535 - 742
Target Start/End: Complemental strand, 43407544 - 43407333
Alignment:
| Q |
535 |
tttgtgcaggcagagccttgcgtcaatgcttttgcttaattgatat---at-tttagatgatcaacaggtctcctatttaatgaccaaaaatgcaatttc |
630 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43407544 |
tttgtgcaggcagagccttgcgtcaatgcttttgcttaattgatatgatatatttagatgatcaacaggtctcctatttaatgaccaaaaatgcaatttc |
43407445 |
T |
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| Q |
631 |
aatttctttatatttttagtttagttggacccactagtaagctaaagcagcgactggcctatatctatattttatatctctatattctctttcacaatta |
730 |
Q |
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| T |
43407444 |
aatttctttatatttttagtttagttggacccactagtaagctaaagcagcgactggcctatatctatattttatatctctatattctctttcacaatta |
43407345 |
T |
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| Q |
731 |
gcagcgctgtaa |
742 |
Q |
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| T |
43407344 |
gcagcgctgtaa |
43407333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 835 - 945
Target Start/End: Complemental strand, 43407242 - 43407132
Alignment:
| Q |
835 |
ctcgtgctgagagcaacacatgcatagaaacatatatactatcaacatgtactagtactatatgaactcaatcaatgagagacagaaagagacaaggata |
934 |
Q |
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| T |
43407242 |
ctcgtgctgagagcaacacatgcatagaaacatatatactatcaacatgtactagtactatatgaactcaatcaatgagagacagaaagagacaaggata |
43407143 |
T |
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| Q |
935 |
ggtatattatt |
945 |
Q |
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| T |
43407142 |
ggtatattatt |
43407132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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