View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11242_low_12 (Length: 365)
Name: NF11242_low_12
Description: NF11242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11242_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 7524308 - 7523958
Alignment:
| Q |
1 |
aatgctagagttgaaaagggtagtgctgtgaaaaaggctggtgggttaggtatgattatggcgaataccgaagaaaacggtgaagagcttcttgctgatg |
100 |
Q |
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| T |
7524308 |
aatgctagagttgaaaagggtagtgctgtgaaaaaggctggtgggttaggtatgattatggcgaataccgaagaaaacggtgaagagcttcttgctgatg |
7524209 |
T |
|
| Q |
101 |
ctcatcttgttgcagctacaatggtgggtcaaaatgctgctgaaaagattagagagtatataaaatcgagtgagaatccaacggccacgatcaagtttaa |
200 |
Q |
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| T |
7524208 |
ctcatcttgttgcagctacaatggtgggtgaaaatgctgctgaaaagattagagagtatataaaatcgagtgagaatccaacggccacgatcaagtttaa |
7524109 |
T |
|
| Q |
201 |
agggactgtgatcggtggtgaaggttcgccttctgctcctcaagttgcttccttttcgagcaggggtccaaattatagaactgcagagattcttaaacca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7524108 |
agggactgtgatcggtggtgaaggttcgccttctgctcctcaagttgcttccttttcgagcaggggtccaaattatagaactgcagagattcttaaacca |
7524009 |
T |
|
| Q |
301 |
gatgttatagctcctggtgttaacattttagcagggtggactgggaaagtg |
351 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7524008 |
gatgtcatagctcctggtgttaacattttagcagggtggactgggaaagtg |
7523958 |
T |
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