View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11242_low_13 (Length: 333)
Name: NF11242_low_13
Description: NF11242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11242_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 283
Target Start/End: Original strand, 38014379 - 38014642
Alignment:
| Q |
17 |
actttgcaaaacctaaacctagatttttaggcgccaaactattatggccgttagatcaatctatttgggcgcctggaacatgtgagccattgattgcttt |
116 |
Q |
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| T |
38014379 |
actttacaaaacctaaacctagatttttaggcgccaaactattatggccgttagatcaatctatttgggcgcctggaacatatcagccattgattgcttt |
38014478 |
T |
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| Q |
117 |
ttaacgcttgattacacacatcaatgctagatgttaatgctgggttgattgcatttactgttatttgacttgcacggttcaaccacattggtttgaaatt |
216 |
Q |
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| T |
38014479 |
ttaacgcttgattacacacatcaatgctagatgttaatgctgggttgattgcatttattgttatttgacttgcacggttcaaccacattggtttgaaatt |
38014578 |
T |
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| Q |
217 |
caaatttcttctcttccatattccaatggtgcattaaatgtgtgtatcaaacccaatatgatatctt |
283 |
Q |
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| T |
38014579 |
caaatttc--ctcttccatattccaatggcgcattaaatgtgtgtatcaaa-ccaatatgatatctt |
38014642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 38 - 311
Target Start/End: Complemental strand, 31413335 - 31413063
Alignment:
| Q |
38 |
gatttttaggcgccaaactattatggccgttagatcaatctatttgggcgcctggaacatgtgagccattgattgctttttaacgcttgattaca--cac |
135 |
Q |
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| T |
31413335 |
gatttttaggcgccaaaatattgtggccgttagatcaatctatttgggtgcctggaacatatcagccattgattgctttttaacgcttgattacacacac |
31413236 |
T |
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| Q |
136 |
atcaatgctagatgttaatgctgggttgattgcatttactgttatttgacttgcacggttcaaccacattggtttgaaattcaaatttcttctcttccat |
235 |
Q |
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| T |
31413235 |
atcaatgctagatgttaatgctgggttaattgcatttactcttatttgacttgcacggttc-accacattggtttgaaattcaaattt-tccccttccat |
31413138 |
T |
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| Q |
236 |
attccaatggtgcattaaatgtgtgtatcaaacccaatatgatatcttgctccacatgatcatatctttctcaaaa |
311 |
Q |
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| T |
31413137 |
attccaatggtgcattaaatgtgtgtatcaaa-ccaatatgatatcttgctccacatgatcatatctttctcaaaa |
31413063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Original strand, 2769789 - 2769822
Alignment:
| Q |
269 |
ccaatatgatatcttgctccacatgatcatatct |
302 |
Q |
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| T |
2769789 |
ccaataagatatcttgctccacatgatcatatct |
2769822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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