View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11242_low_16 (Length: 267)
Name: NF11242_low_16
Description: NF11242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11242_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 6e-83; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 35125903 - 35125728
Alignment:
| Q |
1 |
ctcaatcatgttatgaagcatatacactatgaggatgaaaacactaactatatctgccttggtccagttaataaggtggttaattatatatcattattat |
100 |
Q |
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| T |
35125903 |
ctcaatcatgttatgaagcatatacactatgaggatgaaaacactaactatatctgccttggtccagttaataaggtggttaattatatatcattattat |
35125804 |
T |
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| Q |
101 |
gtgctagctgctatgaagcacggacattccttggattccttggattaggtgtgtcttgatgtcatacatgtgtcct |
176 |
Q |
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| T |
35125803 |
gtgctagctgctatcaagcacggacattctttgaatttcttagattaggtgtgtcttgatgtcatacatgtgtcct |
35125728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 33340204 - 33340462
Alignment:
| Q |
1 |
ctcaatcatgttatgaagcatatacactatgaggatgaaaacactaactatatctgccttggtccagttaataaggtggttaattatatatcattattat |
100 |
Q |
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| T |
33340204 |
ctcaatcatgttatgaagcatatacactatgaggatgaaaacactaactatatctgccttggtccagttaataaggtggttaattatatatcattattat |
33340303 |
T |
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| Q |
101 |
gtgctagctgctatgaagcacggacattccttggattccttggattaggtgtgtcttgatgtcatacatgtgtccttg--gattcct---------tgac |
189 |
Q |
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| T |
33340304 |
g---------ctatgaagcacggacattccttggattccttggattaggtctgtcttgatgtcatacatgtgtcctgtccgacaccggcacgacaatgac |
33340394 |
T |
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| Q |
190 |
acttataattacagtaacatatgtgannnnnnnaaattatcaacggtgtcggcgtgtctgtgtctgtg |
257 |
Q |
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| T |
33340395 |
acttataattacagtaaaatatgtgatttttttaaattatcaacggtgtcggcgtgtctgtgtttgtg |
33340462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 257
Target Start/End: Complemental strand, 35125707 - 35125636
Alignment:
| Q |
186 |
tgacacttataattacagtaacatatgtgannnnnnnaaattatcaacggtgtcggcgtgtctgtgtctgtg |
257 |
Q |
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| T |
35125707 |
tgacacttataattacagtaaaatatgtgatttttttaaattatcaacggtgtcggcgtgtctgtgtttgtg |
35125636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 22506027 - 22506099
Alignment:
| Q |
5 |
atcatgttatgaagcatatacactatgaggatgaaaacactaactatatctgccttggtccagttaataaggt |
77 |
Q |
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| T |
22506027 |
atcacgttatgaagcatatacactatgaggatcaaaacactaactacatttgccttggtcccgtgaataaggt |
22506099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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