View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11242_low_17 (Length: 264)
Name: NF11242_low_17
Description: NF11242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11242_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 2451284 - 2451449
Alignment:
| Q |
17 |
ataaacaattcacgtttgttttccaatcatcttggtcttagctaggtatgaagtgaaaattggaaaacaagaacaaattttcaattgttctctcttctaa |
116 |
Q |
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| T |
2451284 |
ataaacaattcacgtttgttttccaatcatcttggtcttagctaggtatgaagtgaaaattggaaaacaagaacaaattttcaattgttctctcttctaa |
2451383 |
T |
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| Q |
117 |
ggtccctttcaccttctgtgggagtcttgtgtttgatcgattatccttaatctgatcatgggtgtg |
182 |
Q |
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| T |
2451384 |
ggtccctttcaccttctgtgggagtcttgtgtttgatcgattatccttaatctgatcatgggtgtg |
2451449 |
T |
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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 23729998 - 23730041
Alignment:
| Q |
57 |
gctaggtatgaagtgaaaattggaaaacaagaacaaattttcaa |
100 |
Q |
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| T |
23729998 |
gctaggtatgaagtgaaaattggaaaacaagaacaaattttcaa |
23730041 |
T |
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