View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11242_low_18 (Length: 242)
Name: NF11242_low_18
Description: NF11242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11242_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 33340150 - 33339925
Alignment:
| Q |
1 |
cattatcaagaaaaccccataaaatattctgtatcattggacatggatggtacaaatcttcctgcaattattactcattattaattggaaatattatagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33340150 |
cattatcaagaaaaccccataaaatattctgtatcattggacatggatggtacaaatcttcctgcaattattactcattattaattggaaatattatagg |
33340051 |
T |
|
| Q |
101 |
tatatgtgacacaattaattaagacaagaaccttagcacaatgatatttagcgtggtcccaatttagtatatgataaggtaaggtatagatctctcttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33340050 |
tatatgtgacacaattaattaagacaagaaccttagcacaatgatatttagcgtggtcccaatttagtatatgataaggtaaggtatagatctctcttct |
33339951 |
T |
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| Q |
201 |
gatagataaaacaatagcactgaatg |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
33339950 |
gatagataaaacaatagcactgaatg |
33339925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 35125957 - 35126182
Alignment:
| Q |
1 |
cattatcaagaaaaccccataaaatattctgtatcattggacatggatggtacaaatcttcctgcaattattactcattattaattggaaatattatagg |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35125957 |
cattatcaagaaaaccccataaaatattctgtatcattggacatggatggtacaaatcttcctgcaattattactcattattaattggaaatattatagg |
35126056 |
T |
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| Q |
101 |
tatatgtgacacaattaattaagacaagaaccttagcacaatgatatttagcgtggtcccaatttagtatatgataaggtaaggtatagatctctcttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35126057 |
tatatgtgacacaattaattaagacaagaaccttagcacaatgatatttagcgtggtcccaatttagtatatgataaggtaaggtatagatctctcttct |
35126156 |
T |
|
| Q |
201 |
gatagataaaacaatagcactgaatg |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
35126157 |
gatagataaaacaatagcactgaatg |
35126182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 22505961 - 22505882
Alignment:
| Q |
9 |
agaaaaccccataaaatattctgtatcattggacatggatggtacaaatcttcctgcaat-tattactcattattaattg |
87 |
Q |
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|||||| ||||||||||||| ||||| |||| ||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
22505961 |
agaaaagcccataaaatattttgtattgttgggcatggatggtacaaatcttcctgcaataaattattcattattaattg |
22505882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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