View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11242_low_2 (Length: 939)
Name: NF11242_low_2
Description: NF11242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11242_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 576 - 923
Target Start/End: Original strand, 42346299 - 42346644
Alignment:
| Q |
576 |
aacggctctattgactatactatacattcaatagacatatattcacccgcattaaaaattatgattgcatgccacggcattaatggcaaatatgtactca |
675 |
Q |
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| T |
42346299 |
aacggctctatcaactatactatacattcaata----tatatccacccgcattaaaaattatgattgcatgccacagcatcagtggcaaatatgttctca |
42346394 |
T |
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| Q |
676 |
aaatctaaaaaaggtaaggacattatttccctttaccttaatcccactacagaggttcaagggatccactt--cagtctttccatccgtgcttgaagcct |
773 |
Q |
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| T |
42346395 |
aaatctagggaaggaaaggaaattaattccctttaccttaatcacgctacagagggtcaagggatccacttttcagccgttccatccgtgcttgaagccc |
42346494 |
T |
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| Q |
774 |
tgacaaagccttttcatccatgggatgtccgccaccttacaaagtattctcagctccaacatgttctgatgctaaaggaatctgactatgaggaagtcca |
873 |
Q |
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| T |
42346495 |
tgacaaagctttttcatctacaggatgtaccccaccttgtaaagtattttcagctccaacatgttctgatgcaagaggaatctgactatgaggaagtcca |
42346594 |
T |
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| Q |
874 |
cggttcaagttgtcgataacacttgtcaatggcctagcaccaaattctgt |
923 |
Q |
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| T |
42346595 |
tggttaaagttatcgttaacacttgtcaatggcctagtaccagattctgt |
42346644 |
T |
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Back To:
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Target: chr8 (Bit Score: 165; Significance: 9e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 9e-88
Query Start/End: Original strand, 752 - 932
Target Start/End: Original strand, 8188465 - 8188645
Alignment:
| Q |
752 |
tttccatccgtgcttgaagccttgacaaagccttttcatccatgggatgtccgccaccttacaaagtattctcagctccaacatgttctgatgctaaagg |
851 |
Q |
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| T |
8188465 |
tttccatccgtgcttgaagccctgacaaagccttttcatccatgggatgtccgccaccttacaaagtattctcagctccaacatgttctaatgctaaagg |
8188564 |
T |
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| Q |
852 |
aatctgactatgaggaagtccacggttcaagttgtcgataacacttgtcaatggcctagcaccaaattctgtctgtgctcc |
932 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8188565 |
aatatgactatgaggaagtccacggttcaagttgtcgataacacttgtcaatggcctagcaccagattctgtctgtgctcc |
8188645 |
T |
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