View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11242_low_20 (Length: 230)

Name: NF11242_low_20
Description: NF11242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11242_low_20
NF11242_low_20
[»] chr7 (13 HSPs)
chr7 (15-210)||(31594923-31595118)
chr7 (21-208)||(31604538-31604725)
chr7 (21-208)||(31614413-31614600)
chr7 (15-208)||(31608123-31608319)
chr7 (15-208)||(31618136-31618329)
chr7 (15-208)||(31575863-31576059)
chr7 (21-210)||(31532268-31532460)
chr7 (15-208)||(31585273-31585469)
chr7 (15-208)||(31540888-31541081)
chr7 (97-205)||(31573006-31573114)
chr7 (21-138)||(31439256-31439373)
chr7 (26-210)||(33305316-33305497)
chr7 (23-130)||(21898516-21898623)
[»] chr1 (1 HSPs)
chr1 (15-210)||(52174478-52174673)
[»] chr4 (1 HSPs)
chr4 (23-210)||(15063531-15063718)
[»] scaffold0394 (1 HSPs)
scaffold0394 (23-210)||(1816-2003)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 31594923 - 31595118
Alignment:
Q  15 cataggctcaccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaagatcattaccttgctcaagatccttataaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31594923 cataggctcaccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaagatcattaccttgctcaagatccttataaa 31595022  T
Q  115 tccagtctggaaagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaacatgccataactgt 210  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31595023 tccagtctggaaagtacatttcagaagtacacgaccctccagtttgatagttctttcttcctccaatcatttcaagaatcaacataccataactgt 31595118  T

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Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 31604538 - 31604725
Alignment:
Q  21 ctcaccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaagatcattaccttgctcaagatccttataaatccagt 120  Q
    ||||||| |||||||||| | |||||||||||||||||||| || | |||| || |||||||||||  |||||||||||||||||||||||||||||| |    
T  31604538 ctcaccaaagtaatctttctgaccatatcattttcttcctccgagactgtcgaacaatttaaaagagtattaccttgctcaagatccttataaatccaat 31604637  T
Q  121 ctggaaagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaacatgccataact 208  Q
    ||||||||||||||||||| ||||| ||||| ||| | |  |||||||| |||||||| |||||||||||||||||||||||||||||    
T  31604638 ctggaaagtacatttcagaagtacatgacccgccagtgtcgtagttcttccttcctccgatcatttcaagaatcaacatgccataact 31604725  T

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Target: chr7; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 31614413 - 31614600
Alignment:
Q  21 ctcaccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaagatcattaccttgctcaagatccttataaatccagt 120  Q
    ||||||| ||| |||||| ||| ||||||||||||||||||||| ||||||||| |||||||||||   |||  ||||||||||| |||||||||||| |    
T  31614413 ctcaccaaagtgatctttctaatcatatcattttcttcctctgagattgtcaaacaatttaaaagagtgttattttgctcaagattcttataaatccaat 31614512  T
Q  121 ctggaaagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaacatgccataact 208  Q
    ||||||||||||||||||| || || ||||||||| | | ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31614513 ctggaaagtacatttcagaagtgcatgaccctccagtgtcatagttctttcttcctccaatcatttcaagaatcaacattccataact 31614600  T

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Target: chr7; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 31608123 - 31608319
Alignment:
Q  15 cataggctcaccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaagatcat---taccttgctcaagatccttat 111  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||  ||| ||||||||   |||||||| |  ||   |||||||||||||||||||||    
T  31608123 catagactcaccatagtaatctttctaaccatatcattttcttccgttgagattgtcaacccatttaaaacagtatggttaccttgctcaagatccttat 31608222  T
Q  112 aaatccagtctggaaagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaacatgccataact 208  Q
    |||||||||||||||||||||||||||| ||||| ||||| ||| | |  |||||||| ||||||||||||||||||||||||||||||||||||||    
T  31608223 aaatccagtctggaaagtacatttcagaagtacatgacccgccagtgtcgtagttcttccttcctccaatcatttcaagaatcaacatgccataact 31608319  T

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Target: chr7; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 31618136 - 31618329
Alignment:
Q  15 cataggctcaccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaagatcattaccttgctcaagatccttataaa 114  Q
    ||||| ||||||| |||||||||| | | |||||||||||||||||| || |||||  || |||||||||||  ||| ||||||||||||||||||||||    
T  31618136 catagactcaccaaagtaatctttctgatcatatcattttcttcctccgagattgttgaacaatttaaaagagtattcccttgctcaagatccttataaa 31618235  T
Q  115 tccagtctggaaagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaacatgccataact 208  Q
    |||| |||||||||||||||||||| ||||| ||||||||  | |  |||||||| |||||||| |||||||||||||||||||||||||||||    
T  31618236 tccaatctggaaagtacatttcagaagtacatgaccctcccgtgtcgtagttcttccttcctccgatcatttcaagaatcaacatgccataact 31618329  T

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Target: chr7; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 31575863 - 31576059
Alignment:
Q  15 cataggctcaccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaag---atcattaccttgctcaagatccttat 111  Q
    ||||| ||||||| |||||||||| |||||||||||||||||||||||||   ||||| | | || |||||   || |||||||||||||||||||||||    
T  31575863 catagactcaccaaagtaatctttctaaccatatcattttcttcctctgacgatgtcatacagttaaaaaggttattattaccttgctcaagatccttat 31575962  T
Q  112 aaatccagtctggaaagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaacatgccataact 208  Q
    ||||||| |||||||| |||||||| |  ||||||||||||||| | | ||||||||| |||||||| |||||||||||||||||||||||||||||    
T  31575963 aaatccaatctggaaaatacatttccggagtacacgaccctccagtgtcatagttcttccttcctccgatcatttcaagaatcaacatgccataact 31576059  T

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Target: chr7; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 31532268 - 31532460
Alignment:
Q  21 ctcaccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaag---atcattaccttgctcaagatccttataaatcc 117  Q
    |||||||||||||||||| | |||||||||||||||||||||||| ||   ||| |||| | |||   || ||||||||| |||||||||||||||||||    
T  31532268 ctcaccatagtaatctttctcaccatatcattttcttcctctgaattttctaaataattcacaaggttattattaccttgttcaagatccttataaatcc 31532367  T
Q  118 agtctggaaagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaacatgccataactgt 210  Q
    |||| ||||||||||||||||| ||||| ||||||||| | | ||| ||||||||||||||||||||||| ||||| ||||| ||||||||||    
T  31532368 agtcaggaaagtacatttcagaagtacatgaccctccagtgtcataattctttcttcctccaatcatttctagaattaacatcccataactgt 31532460  T

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Target: chr7; HSP #8
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 31585273 - 31585469
Alignment:
Q  15 cataggctcaccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaaga---tcattaccttgctcaagatccttat 111  Q
    ||||| || ||||||||||||||| ||||||| ||||||||||| || || ||||||||| |||||||||||   |||||||||||||||||||||||||    
T  31585273 catagacttaccatagtaatctttctaaccatgtcattttcttcttcggagattgtcaaacaatttaaaagaggttcattaccttgctcaagatccttat 31585372  T
Q  112 aaatccagtctggaaagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaacatgccataact 208  Q
    ||||||| |||||||||||||||||||| | ||| || |||||  | |  |||||||| || ||||| || ||||| ||||||| ||||||||||||    
T  31585373 aaatccaatctggaaagtacatttcagaagcacatgaacctcctgtgtcgtagttcttcctacctccgataatttctagaatcagcatgccataact 31585469  T

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Target: chr7; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 31540888 - 31541081
Alignment:
Q  15 cataggctcaccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaagatcattaccttgctcaagatccttataaa 114  Q
    ||||| ||||||||||||||| || | ||||||||||||||||||| |||  |||  ||| ||||   ||| | |||| |||||||||||||||||||||    
T  31540888 catagactcaccatagtaatcattcttaccatatcattttcttcctttgagtttgctaaacaattagcaaggttattagcttgctcaagatccttataaa 31540987  T
Q  115 tccagtctggaaagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaacatgccataact 208  Q
    |||| ||||||||  |||||||||| ||||| ||||||||| | | ||| ||||||||||| |||| |||||| ||||| ||||| ||||||||    
T  31540988 tccaatctggaaaacacatttcagaagtacatgaccctccagtgtcataattctttcttcccccaaccatttctagaattaacataccataact 31541081  T

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Target: chr7; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 97 - 205
Target Start/End: Complemental strand, 31573114 - 31573006
Alignment:
Q  97 gctcaagatccttataaatccagtctggaaagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaa 196  Q
    |||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||  | | ||||||||||||||| ||||||||||| | ||| ||    
T  31573114 gctcaagatcattataaatccaatctggaaagtacatttcagaagtacacgaccctcctgtgtcatagttctttcttccaccaatcatttctaaaattaa 31573015  T
Q  197 catgccata 205  Q
    ||| |||||    
T  31573014 cataccata 31573006  T

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Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 31439373 - 31439256
Alignment:
Q  21 ctcaccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaagatcattaccttgctcaagatccttataaatccagt 120  Q
    ||||||||||||||||| || || |||||||||||||| || || ||||| |||  |||| |||||  |||||||||||||||||||||||| ||||| |    
T  31439373 ctcaccatagtaatcttctttacgatatcattttcttcttcggagattgttaaattatttgaaagagtattaccttgctcaagatccttatatatccaat 31439274  T
Q  121 ctggaaagtacatttcag 138  Q
    | ||||||||||||||||    
T  31439273 ccggaaagtacatttcag 31439256  T

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Target: chr7; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 26 - 210
Target Start/End: Complemental strand, 33305497 - 33305316
Alignment:
Q  26 catagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaagatcattaccttgctcaagatccttataaatccagtctgga 125  Q
    ||||||||||||| |  |||||||||||||||| |||||  |||   || ||||   ||| | ||||| | |||||||||||||||||||||| |||| |    
T  33305497 catagtaatctttcttgccatatcattttcttcttctgagtttgcagaacaatt---aaggttattacttagctcaagatccttataaatccaatctgaa 33305401  T
Q  126 aagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaacatgccataactgt 210  Q
    ||||||||||| |||||||| ||||||||  | | ||| ||||||||||| || |||||||| || || ||||| ||||||||||    
T  33305400 aagtacatttccgatgtacatgaccctcccgtgtcataattctttcttcccccgatcatttctagtattaacataccataactgt 33305316  T

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Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 21898623 - 21898516
Alignment:
Q  23 caccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaagatcattaccttgctcaagatccttataaatccagtct 122  Q
    ||||||||||||||||   |  |||||||| |||||||||||||||   |||||||| | ||| |  |||||||| | |||||| ||||| |||||||||    
T  21898623 caccatagtaatctttcgtattatatcattctcttcctctgaaatttcaaaagaattcacaaggttgttaccttgttgaagatcattatagatccagtct 21898524  T
Q  123 ggaaagta 130  Q
    ||||||||    
T  21898523 ggaaagta 21898516  T

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Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 52174673 - 52174478
Alignment:
Q  15 cataggctcaccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaagatcattaccttgctcaagatccttataaa 114  Q
    ||||| ||||||| |||||||||| ||||||||||||||||||||||||| ||||||||| ||||| |||||  ||| ||||||||||||||||||||||    
T  52174673 catagactcaccaaagtaatctttataaccatatcattttcttcctctgagattgtcaaacaatttgaaagagtatttccttgctcaagatccttataaa 52174574  T
Q  115 tccagtctggaaagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaacatgccataactgt 210  Q
    |||||||||||||||||||||| || ||||| ||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52174573 tccagtctggaaagtacatttctgaagtacatgaccctccagtgtcatagttctttcttcctccaatcatttcaagaatcaacatgccataactgt 52174478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 15063718 - 15063531
Alignment:
Q  23 caccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaagatcattaccttgctcaagatccttataaatccagtct 122  Q
    ||||||||||||||| || | ||||||||||||||| ||||| |||| ||||  |||||||||   |||||||||||||||||||||| | ||||| ||     
T  15063718 caccatagtaatcttctttagcatatcattttcttcttctgagattgccaaactatttaaaagggaattaccttgctcaagatccttaaatatccaatcc 15063619  T
Q  123 ggaaagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaacatgccataactgt 210  Q
    ||||||||   ||| | ||||   ||||| ||| | | ||| |||||| |||||||  ||||||||||||||||||||||||||||||    
T  15063618 ggaaagtatgcttcggttgtatgagacccgccagtgtcataattcttttttcctccggtcatttcaagaatcaacatgccataactgt 15063531  T

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Target: scaffold0394 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 1816 - 2003
Alignment:
Q  23 caccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaagatcattaccttgctcaagatccttataaatccagtct 122  Q
    ||||||||||||||| || | ||||||||||||||| ||||| |||| || |  ||||||||||  |||||||||||||||||||||| | ||||| ||     
T  1816 caccatagtaatcttctttagcatatcattttcttcttctgagattgccatactatttaaaagagaattaccttgctcaagatccttaaatatccaatcc 1915  T
Q  123 ggaaagtacatttcagatgtacacgaccctccactttgatagttctttcttcctccaatcatttcaagaatcaacatgccataactgt 210  Q
    | ||||||  |||| | || |   ||||| ||| | | ||| |||||| |||||||  ||||||||||||||||||||||||||||||    
T  1916 gaaaagtatgtttcggctgcaagagacccgccagtgtcataattcttttttcctccggtcatttcaagaatcaacatgccataactgt 2003  T

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