View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11242_low_5 (Length: 503)

Name: NF11242_low_5
Description: NF11242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11242_low_5
NF11242_low_5
[»] chr2 (6 HSPs)
chr2 (175-450)||(11272343-11272617)
chr2 (198-359)||(1479466-1479627)
chr2 (243-462)||(13016919-13017138)
chr2 (169-243)||(33858646-33858720)
chr2 (177-245)||(13016050-13016118)
chr2 (323-385)||(30995317-30995379)
[»] chr5 (2 HSPs)
chr5 (177-441)||(36988850-36989114)
chr5 (177-222)||(40296118-40296163)
[»] chr6 (4 HSPs)
chr6 (170-466)||(2920929-2921224)
chr6 (163-399)||(1034162-1034399)
chr6 (163-285)||(18246532-18246654)
chr6 (194-243)||(10232781-10232830)
[»] chr8 (6 HSPs)
chr8 (189-402)||(8273696-8273909)
chr8 (197-441)||(37269863-37270106)
chr8 (197-441)||(42941061-42941305)
chr8 (163-459)||(9936199-9936495)
chr8 (197-285)||(36404084-36404172)
chr8 (193-254)||(30503004-30503065)
[»] chr1 (3 HSPs)
chr1 (177-360)||(32774127-32774310)
chr1 (399-487)||(4640986-4641074)
chr1 (326-384)||(19586683-19586741)
[»] chr7 (3 HSPs)
chr7 (163-459)||(42460087-42460383)
chr7 (176-285)||(31234744-31234853)
chr7 (182-462)||(21245198-21245478)
[»] chr3 (4 HSPs)
chr3 (152-254)||(53553625-53553727)
chr3 (163-285)||(1259279-1259401)
chr3 (163-285)||(37242567-37242689)
chr3 (326-387)||(51042156-51042217)
[»] chr4 (4 HSPs)
chr4 (163-285)||(16989583-16989705)
chr4 (177-279)||(2282226-2282328)
chr4 (194-267)||(50143549-50143622)
chr4 (313-377)||(4913489-4913553)
[»] scaffold0760 (1 HSPs)
scaffold0760 (197-333)||(1742-1878)
[»] scaffold0495 (1 HSPs)
scaffold0495 (194-243)||(9504-9553)


Alignment Details
Target: chr2 (Bit Score: 140; Significance: 4e-73; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 175 - 450
Target Start/End: Complemental strand, 11272617 - 11272343
Alignment:
Q  175 cgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaaacccatgaaacc 274  Q
    ||||||||| || ||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||    
T  11272617 cgttcatcttctatttgggcactctctaggaatccaagttcactcatagaagaggaaagaagctatctttaacctactcaacgtccaaacccaagaaacc 11272518  T
Q  275 gctttgatttcgtcaacaatctcctccacctccttcctttgattcgtgaaaatccttgcatttctctccttccaaatcaaccaaagtgttgcgtgccaaa 374  Q
    ||||||||||| |  ||||| |||||||| ||||| ||||||||  ||||||||||||||||||| | ||| ||||||||||||| |||||| |||||||    
T  11272517 gctttgatttcattcacaatttcctccacttcctttctttgattattgaaaatccttgcatttct-ttctttcaaatcaaccaaattgttgcatgccaaa 11272419  T
Q  375 tcaaccaaaaccccttcttaagtcttttcgagttcgcctcaccattccaacattcaaaatgaacaaataaattatg 450  Q
    ||||||||||||||||||||||| | || || ||  | |||  ||||||||||||||| || |||||||| |||||    
T  11272418 tcaaccaaaaccccttcttaagtatcttagatttaacttcattattccaacattcaaattgcacaaataagttatg 11272343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 198 - 359
Target Start/End: Original strand, 1479466 - 1479627
Alignment:
Q  198 ctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaaacccatgaaaccgctttgatttcgtcaacaatctc 297  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||| |||||| |||| |||||||||||||| |||||||| | |||    
T  1479466 ctctaggattccaagtccactcataaaagaggaacgatgctatctttaatctactcagcgtccaatcccacgaaaccgctttgatctcgtcaactacctc 1479565  T
Q  298 ctccacctccttc-ctttgattcgtgaaaatccttgcatttctctccttccaaatcaaccaaa 359  Q
     |||||||||||| ||||| || |||||||||||||||||||| ||||||||| |||||||||    
T  1479566 ttccacctccttctctttg-ttggtgaaaatccttgcatttctttccttccaagtcaaccaaa 1479627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 462
Target Start/End: Original strand, 13016919 - 13017138
Alignment:
Q  243 ttaacctactcagtgtccaaacccatgaaaccgctttgatttcgtcaacaatctcctccacctccttc-ctttgattcgtgaaaatccttgcatttctct 341  Q
    |||| |||||||  ||||||||||| |||||| |||| || || || || |  ||||| || |||||| ||||| ||| | |||||||| |||||||| |    
T  13016919 ttaatctactcaacgtccaaacccaagaaaccacttttatctcatccactagttcctctacttccttcactttg-ttcttaaaaatcctagcatttcttt 13017017  T
Q  342 ccttccaaatcaaccaaagtgttgcgtgccaaatcaaccaaaaccccttcttaagtcttttcgagttcgcctcaccattccaacattcaaaatgaacaaa 441  Q
    || |||||||| |||||| ||| || ||||||||||||||||| || |||||| | ||||| |||  | | |||| ||||||||||||||| ||  ||||    
T  13017018 ccatccaaatcgaccaaattgtcgcatgccaaatcaaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaa 13017117  T
Q  442 taaattatgaggagtaatgaa 462  Q
     || ||||| ||||| |||||    
T  13017118 caagttatgtggagttatgaa 13017138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 33858646 - 33858720
Alignment:
Q  169 cagccccgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctt 243  Q
    ||||| ||||||||| || ||||| || |||| ||||||||||||||||||||| |||||||| |||||| ||||    
T  33858646 cagccacgttcatcttctatttagacattctcgaggattccaagtccactcatataagaggaaggaagctttctt 33858720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 13016050 - 13016118
Alignment:
Q  177 ttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatcttta 245  Q
    ||||||| || || ||||||||||| |||||||||||||||||||| ||||| ||||| | ||||||||    
T  13016050 ttcatcttctattaaggcactctctcggattccaagtccactcataaaagagaaaagaggttatcttta 13016118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 385
Target Start/End: Complemental strand, 30995379 - 30995317
Alignment:
Q  323 aaaatccttgcatttctctccttccaaatcaaccaaagtgttgcgtgccaaatcaaccaaaac 385  Q
    |||||||  ||||| |||||||||||||||| |||||  | ||||||||||||||||||||||    
T  30995379 aaaatccgagcattcctctccttccaaatcatccaaatagatgcgtgccaaatcaaccaaaac 30995317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 177 - 441
Target Start/End: Complemental strand, 36989114 - 36988850
Alignment:
Q  177 ttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaaacccatgaaaccgc 276  Q
    ||||||||||| |||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||    ||||||||| ||||||||    
T  36989114 ttcatctccttgttagacactctctaggattccacgtccacttatagaagaggaaagaagctatcttcaacctactcaacaaccaaacccaagaaaccgc 36989015  T
Q  277 tttgatttcgtcaacaatctcctccacctccttcctttgattcgtgaaaatccttgcatttctctccttccaaatcaaccaaagtgttgcgtgccaaatc 376  Q
    |||||||||||  || || |||||||| | ||||||| ||||  | |||||||| |||||||| |||||||||||||||||||  || || |||||||||    
T  36989014 tttgatttcgttcactatttcctccacattcttccttagattattaaaaatcctcgcatttctttccttccaaatcaaccaaatagtagcatgccaaatc 36988915  T
Q  377 aaccaaaaccccttcttaagtcttttcgagttcgcctcaccattccaacattcaaaatgaacaaa 441  Q
    ||||||||||| || ||||| || ||||   || | |||| ||||||||| |||||||| |||||    
T  36988914 aaccaaaaccctttattaagcctcttcggcatcacttcactattccaacaatcaaaatggacaaa 36988850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 40296118 - 40296163
Alignment:
Q  177 ttcatctcctttttaggcactctctaggattccaagtccactcata 222  Q
    ||||||| || ||||| |||||| ||||||||||||||||||||||    
T  40296118 ttcatcttctatttagacactctttaggattccaagtccactcata 40296163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 170 - 466
Target Start/End: Original strand, 2920929 - 2921224
Alignment:
Q  170 agccccgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaaacccatg 269  Q
    |||| ||||||||| || ||||| || ||||  |||||||| ||||||||||| |||||||||||||||||||||||||||||||   |||||||||| |    
T  2920929 agccacgttcatcttctgtttagacattctcgtggattccatgtccactcataaaagaggaaagaagctatctttaacctactcaacatccaaacccaag 2921028  T
Q  270 aaaccgctttgatttcgtcaacaatctcctccacctccttcctttgattcgtgaaaatccttgcatttctctccttccaaatcaaccaaagtgttgcgtg 369  Q
    |||  ||||| || ||||| ||||| |||||||| ||||||||||| ||  |||| |||||||| ||||| |||||||||||| ||||||  || | |||    
T  2921029 aaagtgctttaatatcgtccacaatttcctccacatccttcctttggttattgaagatccttgcgtttctttccttccaaatcgaccaaatagtagtgtg 2921128  T
Q  370 ccaaatcaaccaaaaccccttcttaagtcttttcgagttcgcctcaccattccaacattcaaaatgaacaaataaattatgaggagtaatgaagtta 466  Q
    |||||||||||||||  |||||||| | || ||||| |||   ||||||||||||||  |||||||| |||| || |||||||||||||| ||||||    
T  2921129 ccaaatcaaccaaaaatccttcttatgcctcttcga-ttccattcaccattccaacaaacaaaatgagcaaacaagttatgaggagtaataaagtta 2921224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 163 - 399
Target Start/End: Complemental strand, 1034399 - 1034162
Alignment:
Q  163 aaaagccagccccgttcatctcctt-tttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtcca 261  Q
    ||||| |||| || ||||||||| | |||||||||||| |||||||||||||||||||||| |||||||| || ||||||||||| |||||||  |||||    
T  1034399 aaaagacagcacctttcatctccctatttaggcactctttaggattccaagtccactcataaaagaggaacgatgctatctttaatctactcaacgtcca 1034300  T
Q  262 aacccatgaaaccgctttgatttcgtcaacaatctcctccacctccttc-ctttgattcgtgaaaatccttgcatttctctccttccaaatcaaccaaag 360  Q
    |||||| ||||||||||| || || || || |||||  | ||||||||| ||||| ||  | ||||||||||||||||| |||||||||||||||||||     
T  1034299 aacccaagaaaccgctttaatctcatccactatctcaccaacctccttcgctttg-ttattaaaaatccttgcatttctttccttccaaatcaaccaaat 1034201  T
Q  361 tgttgcgtgccaaatcaaccaaaaccccttcttaagtct 399  Q
    ||| |||||||||||||||||||| || |||||| ||||    
T  1034200 tgtcgcgtgccaaatcaaccaaaaacctttcttatgtct 1034162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 163 - 285
Target Start/End: Original strand, 18246532 - 18246654
Alignment:
Q  163 aaaagccagccccgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaa 262  Q
    ||||| ||||| ||||||||| || ||||| || ||||  |||||||| |||||||||||||||||||||||||||||||| ||||||||||   |||||    
T  18246532 aaaagacagccgcgttcatcttctgtttagacattctcgtggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaa 18246631  T
Q  263 acccatgaaaccgctttgatttc 285  Q
    ||||| |||| |||||| |||||    
T  18246632 acccaagaaagcgctttaatttc 18246654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 10232830 - 10232781
Alignment:
Q  194 cactctctaggattccaagtccactcatagaagaggaaagaagctatctt 243  Q
    |||||| || |||||||| |||||||||| ||||||||||||||||||||    
T  10232830 cactctttaagattccaaatccactcataaaagaggaaagaagctatctt 10232781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 189 - 402
Target Start/End: Complemental strand, 8273909 - 8273696
Alignment:
Q  189 ttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaaacccatgaaaccgctttgatttcgtc 288  Q
    |||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||   ||||||||||| |||||||| || || || ||    
T  8273909 ttagacactctctaggattccaaatccactcataaaagaggaaagaagctatctttaatctactcgtcgtccaaacccaagaaaccgccttaatctcatc 8273810  T
Q  289 aacaatctcctccacctccttcctttgattcgtgaaaatccttgcatttctctccttccaaatcaaccaaagtgttgcgtgccaaatcaaccaaaacccc 388  Q
     || | ||||||||| || ||| |||||||  | ||||||||||||||||| |||||||||||| |||||| ||| || |||||||||||||||||||||    
T  8273809 cactaactcctccacttctttcatttgattgttaaaaatccttgcatttctttccttccaaatcgaccaaattgtcgcatgccaaatcaaccaaaacccc 8273710  T
Q  389 ttcttaagtctttt 402  Q
    || ||||| |||||    
T  8273709 tttttaagcctttt 8273696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 197 - 441
Target Start/End: Original strand, 37269863 - 37270106
Alignment:
Q  197 tctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaaacccatgaaaccgctttgatttcgtcaacaatct 296  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||| |  |||||||    ||||| ||| || |   |||||||||| || |||||||    
T  37269863 tctctaggattccaagtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaagatataactttgatttcctccacaatct 37269962  T
Q  297 cctccacctccttcctttgattcgtgaaaatccttgcatttctctccttccaaatcaaccaaagtgttgcgtgccaaatcaaccaaaaccccttcttaag 396  Q
    | ||||| ||||||  ||||||| | |||||||| |||||||| ||||||||||||  ||||| |||||| |||||||||| ||||| ||| || || ||    
T  37269963 catccacatccttcgcttgattcttaaaaatcctcgcatttct-tccttccaaatcgtccaaattgttgcatgccaaatcatccaaaccccttttttgag 37270061  T
Q  397 tcttttcgagttcgcctcaccattccaacattcaaaatgaacaaa 441  Q
    |||||| ||  || |||||| ||||||||| ||||| || |||||    
T  37270062 tcttttggaactcacctcactattccaacaatcaaattgcacaaa 37270106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 197 - 441
Target Start/End: Complemental strand, 42941305 - 42941061
Alignment:
Q  197 tctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaaacccatgaaaccgctttgatttcgtcaacaatct 296  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||  |||||||    || || ||| || |   |||||||||| || |||||||    
T  42941305 tctctaggattccaagtccactcataaaagaggaaggaagctatctttagtctactcaacaccccaaaccaagataaaactttgatttcctccacaatct 42941206  T
Q  297 cctccacctccttcctttgattcgtgaaaatccttgcatttctctccttccaaatcaaccaaagtgttgcgtgccaaatcaaccaaaaccccttcttaag 396  Q
    | ||||| ||||||  ||||||| | |||||||| |||||| | ||||||||||||  ||||| |||||| || ||||||| ||||| ||| || || ||    
T  42941205 catccacatccttcgcttgattcttaaaaatcctcgcatttttttccttccaaatcgtccaaattgttgcatgtcaaatcatccaaaccccttttttgag 42941106  T
Q  397 tcttttcgagttcgcctcaccattccaacattcaaaatgaacaaa 441  Q
    |||||| ||  || |||||| ||||||||| ||||| || |||||    
T  42941105 tcttttggaactcacctcactattccaacaatcaaattgcacaaa 42941061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 163 - 459
Target Start/End: Complemental strand, 9936495 - 9936199
Alignment:
Q  163 aaaagccagccccgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaa 262  Q
    |||||||||| || ||||||| || |||||||||| |||||| ||||||||||||||||| |||||||| || ||||||||||  || ||||   ||||     
T  9936495 aaaagccagcacctttcatcttctatttaggcactgtctagggttccaagtccactcataaaagaggaacgatgctatctttagtctgctcaacatccac 9936396  T
Q  263 acccatgaaaccgctttgatttcgtcaacaatctcctccacctccttc-ctttgattcgtgaaaatccttgcatttctctccttccaaatcaaccaaagt 361  Q
    ||||| || |||||||  || || || || | |||| | || |||||| ||||| |   ||||||||| ||||||||| ||| |||||||||||||||      
T  9936395 acccaagacaccgcttcaatctcatccactaactccccaacatccttctctttg-tgattgaaaatccgtgcatttctttccatccaaatcaaccaaata 9936297  T
Q  362 gttgcgtgccaaatcaaccaaaaccccttcttaagtcttttcgagttcgcctcaccattccaacattcaaaatgaacaaataaattatgaggagtaat 459  Q
    || || |||||||||||| |||| || ||| |||| ||| |||||  | |||||  ||||||||| ||||||||  |||| ||||||||||| |||||    
T  9936296 gtggcatgccaaatcaacaaaaaacctttcctaagccttctcgagaccacctcattattccaacactcaaaatgcgcaaacaaattatgaggggtaat 9936199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 197 - 285
Target Start/End: Original strand, 36404084 - 36404172
Alignment:
Q  197 tctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaaacccatgaaaccgctttgatttc 285  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||| |  |||||||  | ||||| ||| || ||| ||||||||||    
T  36404084 tctctaggattccaagtccactcgtagaagaggaaggaagctatcttaagtctactcaacgcccaaaaccaagataccactttgatttc 36404172  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 30503004 - 30503065
Alignment:
Q  193 gcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactca 254  Q
    ||||||||| |||||||||  |||||| ||||||||| ||||||||||| | || |||||||    
T  30503004 gcactctctcggattccaacaccactcgtagaagaggtaagaagctatcctcaatctactca 30503065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 7e-47; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 177 - 360
Target Start/End: Original strand, 32774127 - 32774310
Alignment:
Q  177 ttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaaacccatgaaaccgc 276  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||  ||||||||||| ||||||||    
T  32774127 ttcatcttctatttaggcactctctaggattccaagtccactcataaaagaggaatgaggctatctttaatctactcaacgtccaaacccaagaaaccgc 32774226  T
Q  277 tttgatttcgtcaacaatctcctccacctccttcctttgattcgtgaaaatccttgcatttctctccttccaaatcaaccaaag 360  Q
    |||||| || || || |  ||||| ||||||||| |||| ||  |||| |||||||||||||| ||||||||||||||||||||    
T  32774227 tttgatctcatccactaaatcctcaacctccttcgtttggttgttgaagatccttgcatttctttccttccaaatcaaccaaag 32774310  T

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Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 399 - 487
Target Start/End: Original strand, 4640986 - 4641074
Alignment:
Q  399 ttttcgagttcgcctcaccattccaacattcaaaatgaacaaataaattatgaggagtaatgaagttagattcaagccaattcaagatt 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4640986 ttttcgagttcgcctcaccattccaacattcaaaatgaacaaataaattatgaggagtaatgaagttagactcaagccaattcaagatt 4641074  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 326 - 384
Target Start/End: Original strand, 19586683 - 19586741
Alignment:
Q  326 atccttgcatttctctccttccaaatcaaccaaagtgttgcgtgccaaatcaaccaaaa 384  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||    
T  19586683 atccttgcatttctttccttccaaatcaaccaaatcgttgcgtgccaaaccaaccaaaa 19586741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 163 - 459
Target Start/End: Original strand, 42460087 - 42460383
Alignment:
Q  163 aaaagccagccccgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaa 262  Q
    ||||| |||| || ||||||| || ||||||||||||||||||||||||||| ||||||| |||||||| || |||||||||| ||| |||||| ||||     
T  42460087 aaaaggcagcacctttcatcttctatttaggcactctctaggattccaagtctactcataaaagaggaacgatgctatctttagcctgctcagtatccac 42460186  T
Q  263 acccatgaaaccgctttgatttcgtcaacaatctcctccacctccttcctttgattcgtgaaaatccttgcatttctctccttccaaatcaaccaaagtg 362  Q
    ||||| || |||||||| || || || || | |||| | || ||||||  ||  |   |||||||||  |||||||| |||||||||||||||||||  |    
T  42460187 acccaagacaccgctttaatctcatccactaactccccaacatccttctctttttgattgaaaatccgggcatttctttccttccaaatcaaccaaatag 42460286  T
Q  363 ttgcgtgccaaatcaaccaaaaccccttcttaagtcttttcgagttcgcctcaccattccaacattcaaaatgaacaaataaattatgaggagtaat 459  Q
    | || |||||||||||| |||| || ||| |||  ||| |||||  | |||||  ||||||||| ||||||||  |||| ||||||||||| |||||    
T  42460287 tggcatgccaaatcaacaaaaaacctttcctaatccttctcgagaccacctcattattccaacactcaaaatgcgcaaacaaattatgaggggtaat 42460383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 176 - 285
Target Start/End: Original strand, 31234744 - 31234853
Alignment:
Q  176 gttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaaacccatgaaaccg 275  Q
    |||||||| || ||||| || ||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||   |||||||||| |||| ||    
T  31234744 gttcatcttctgtttagacattctcgtggattccaagtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcg 31234843  T
Q  276 ctttgatttc 285  Q
    |||| |||||    
T  31234844 ctttaatttc 31234853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 182 - 462
Target Start/End: Original strand, 21245198 - 21245478
Alignment:
Q  182 ctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaaacccatgaaaccgctttga 281  Q
    ||||| ||||||||||||||||||||||| | |||||||||||| ||  ||||||| ||||| | ||||||||    ||||| ||| || | | |||| |    
T  21245198 ctcctctttaggcactctctaggattccacgaccactcatagaatagacaagaagcaatcttgagcctactcaaaacccaaaaccaagacaacactttta 21245297  T
Q  282 tttcgtcaacaatctcctccacctccttcctttgattcgtgaaaatccttgcatttctctccttccaaatcaaccaaagtgttgcgtgccaaatcaacca 381  Q
    ||||||| | |||||| || ||||||||   ||| ||  | |||||| | |||||||||||||||||||||||||||| ||| || ||||| || || |     
T  21245298 tttcgtcgataatctcatcaacctccttaaattggtttttaaaaatcttcgcatttctctccttccaaatcaaccaaattgtggcatgccatattaaacg 21245397  T
Q  382 aaaccccttcttaagtcttttcgagttcgcctcaccattccaacattcaaaatgaacaaataaattatgaggagtaatgaa 462  Q
    ||| || |||  ||| |  || ||| |||| |||||||||||| |||| ||||| ||| | ||||| ||||| ||||||||    
T  21245398 aaaacctttcaaaagccgcttagaggtcgcttcaccattccaagattcgaaatgcacatacaaattctgaggtgtaatgaa 21245478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 152 - 254
Target Start/End: Original strand, 53553625 - 53553727
Alignment:
Q  152 atagcatatccaaaagccagccccgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctac 251  Q
    |||||| ||||||||  |||| || |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  53553625 atagcagatccaaaaaacagcgcctttcatctcctatttaggcactctctaggattccaagtccactcataaaagaggaaagaagctatctttaatctac 53553724  T
Q  252 tca 254  Q
    |||    
T  53553725 tca 53553727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 163 - 285
Target Start/End: Original strand, 1259279 - 1259401
Alignment:
Q  163 aaaagccagccccgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaa 262  Q
    ||||| |||||  |||||||| || ||||| || ||||  |||||||| |||||||||||||||||||||||||||||||| ||||||||||   |||||    
T  1259279 aaaagacagccgtgttcatcttctgtttagacattctcgtggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaa 1259378  T
Q  263 acccatgaaaccgctttgatttc 285  Q
    ||||| |||| |||||| |||||    
T  1259379 acccaagaaagcgctttaatttc 1259401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 163 - 285
Target Start/End: Original strand, 37242567 - 37242689
Alignment:
Q  163 aaaagccagccccgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaa 262  Q
    ||||| |||||  |||||||| || ||||| || ||||  |||||||| |||||||||||||||||||||||||||||||| ||||||||||   |||||    
T  37242567 aaaagacagccgtgttcatcttctgtttagacattctcgtggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaa 37242666  T
Q  263 acccatgaaaccgctttgatttc 285  Q
    ||||| |||| |||||| |||||    
T  37242667 acccaagaaagcgctttaatttc 37242689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 387
Target Start/End: Complemental strand, 51042217 - 51042156
Alignment:
Q  326 atccttgcatttctctccttccaaatcaaccaaagtgttgcgtgccaaatcaaccaaaaccc 387  Q
    |||||||||||||| ||||||||||||| ||||| || |||||||||||||||||| |||||    
T  51042217 atccttgcatttctttccttccaaatcatccaaattgatgcgtgccaaatcaaccacaaccc 51042156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 9e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 163 - 285
Target Start/End: Complemental strand, 16989705 - 16989583
Alignment:
Q  163 aaaagccagccccgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaa 262  Q
    ||||| ||||| ||||||||| || ||||| || ||||  |||||||| |||||||||||||||||||||||||||||||| ||||||||||   |||||    
T  16989705 aaaagacagccgcgttcatcttctgtttagacattctcatggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaa 16989606  T
Q  263 acccatgaaaccgctttgatttc 285  Q
    ||||| |||| |||||| |||||    
T  16989605 acccaagaaagcgctttaatttc 16989583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 177 - 279
Target Start/End: Complemental strand, 2282328 - 2282226
Alignment:
Q  177 ttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaaacccatgaaaccgc 276  Q
    ||||||| || |||||||| || ||||| ||| ||||||| |||||||||||||| || ||| ||||||| ||||||| || ||| ||||| ||||||||    
T  2282328 ttcatcttctatttaggcattccctagggttctaagtccattcatagaagaggaacgatgctttctttaatctactcaatgaccacacccaagaaaccgc 2282229  T
Q  277 ttt 279  Q
    |||    
T  2282228 ttt 2282226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 50143622 - 50143549
Alignment:
Q  194 cactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaaaccca 267  Q
    |||||||| || ||||||  |||||| ||||||||| ||||||||||| | || |||||||| | |||||||||    
T  50143622 cactctcttgggttccaacaccactcgtagaagaggcaagaagctatcctcaatctactcagagaccaaaccca 50143549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 377
Target Start/End: Original strand, 4913489 - 4913553
Alignment:
Q  313 ttgattcgtgaaaatccttgcatttctctccttccaaatcaaccaaagtgttgcgtgccaaatca 377  Q
    ||||||| | |||||||| |||||||| ||||||||||||| ||||| ||  || ||||||||||    
T  4913489 ttgattcttaaaaatcctcgcatttctttccttccaaatcatccaaattgaggcatgccaaatca 4913553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 333
Target Start/End: Original strand, 1742 - 1878
Alignment:
Q  197 tctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaaacccatgaaaccgctttgatttcgtcaacaatct 296  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||| |  |||||||    ||||| ||| || |   |||||||||| || |||||||    
T  1742 tctctaggattccaagtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaagatataactttgatttcctccacaatct 1841  T
Q  297 cctccacctccttcctttgattcgtgaaaatccttgc 333  Q
    | ||||| ||||||  ||||||| | |||||||||||    
T  1842 catccacatccttcgcttgattcttaaaaatccttgc 1878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 9553 - 9504
Alignment:
Q  194 cactctctaggattccaagtccactcatagaagaggaaagaagctatctt 243  Q
    |||||| || |||||||| |||||||||| ||||||||||||||||||||    
T  9553 cactctttaagattccaaatccactcataaaagaggaaagaagctatctt 9504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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