View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11242_low_6 (Length: 479)
Name: NF11242_low_6
Description: NF11242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11242_low_6 |
 | |
|
| [»] scaffold0115 (2 HSPs) |
| | |
|
| [»] scaffold0406 (1 HSPs) |
| | |
|
| [»] scaffold0069 (1 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0115 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 20 - 470
Target Start/End: Original strand, 5285 - 5737
Alignment:
| Q |
20 |
ggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaatttggagagtcgaacctatgattgcaaatttataaactcataaataac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5285 |
ggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaatttggatagtcgaacctatgattgcaaatttataaactcataaataac |
5384 |
T |
|
| Q |
120 |
tagtatcgttataaatatttatttaaatgctagagcaaaattggaatgttcccaatggtagaattagaatacctcttttgatgcatcagtaaggttgnnn |
219 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5385 |
tagtatcgttataaatattcatttaaacgctagagcaaaattggaatgttcccaatggtagaattatcatacctcttttgatgcatcagtaaggtttttt |
5484 |
T |
|
| Q |
220 |
nnnn--cttctgtagctattatctccaccatcaaagaacattaactaatttccaaccaaaggagggcaagaataagtactttaactcaccacaattatcc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
5485 |
ttttttcttctgtagctattatctccaccatcaaagaacattcactaatttccaaccaaaggagggcaagaataagtaccttaactcaccataattatcc |
5584 |
T |
|
| Q |
318 |
acaaccaaatttgtcaatttgcaaaaggaatgttgattgtcaccccaaactttgttccaatttaatgagctcaaggtaatgatatccaaattaggaaatg |
417 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5585 |
acaaccaaatttgtcaatttgcaaaatgaatgttgattgtcaccccaaactttgttccaatttaatgagctcaaggtaaggatatccaaattaggaaatg |
5684 |
T |
|
| Q |
418 |
caaccaacatagaaccagaaggtgatttgctgctattgttgttgttcctatgc |
470 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
5685 |
caaccaacatagaaccagagggtgatttactgctattgttgttgttcctatgc |
5737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 20 - 470
Target Start/End: Original strand, 13025 - 13477
Alignment:
| Q |
20 |
ggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaatttggagagtcgaacctatgattgcaaatttataaactcataaataac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13025 |
ggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaatttggatagtcgaacctatgattgcaaatttataaactcataaataac |
13124 |
T |
|
| Q |
120 |
tagtatcgttataaatatttatttaaatgctagagcaaaattggaatgttcccaatggtagaattagaatacctcttttgatgcatcagtaaggttgnnn |
219 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13125 |
tagtatcgttataaatattcatttaaacgctagagcaaaattggaatgttcccaatggtagaattatcatacctcttttgatgcatcagtaaggtttttt |
13224 |
T |
|
| Q |
220 |
nnnn--cttctgtagctattatctccaccatcaaagaacattaactaatttccaaccaaaggagggcaagaataagtactttaactcaccacaattatcc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
13225 |
ttttttcttctgtagctattatctccaccatcaaagaacattcactaatttccaaccaaaggagggcaagaataagtaccttaactcaccataattatcc |
13324 |
T |
|
| Q |
318 |
acaaccaaatttgtcaatttgcaaaaggaatgttgattgtcaccccaaactttgttccaatttaatgagctcaaggtaatgatatccaaattaggaaatg |
417 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13325 |
acaaccaaatttgtcaatttgcaaaatgaatgttgattgtcaccccaaactttgttccaatttaatgagctcaaggtaaggatatccaaattaggaaatg |
13424 |
T |
|
| Q |
418 |
caaccaacatagaaccagaaggtgatttgctgctattgttgttgttcctatgc |
470 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
13425 |
caaccaacatagaaccagagggtgatttactgctattgttgttgttcctatgc |
13477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 20 - 470
Target Start/End: Original strand, 8480155 - 8480592
Alignment:
| Q |
20 |
ggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaatttggagagtcgaacctatgattgcaaatttataaactcataaataac |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8480155 |
ggtgccatattgtcttcaagttctccatgtcattcaatatgatttcctctaatttggagagtcgaacctatgattgcaaatttataaactcataaataac |
8480254 |
T |
|
| Q |
120 |
tagtatcgttataaatattt-atttaaatgctagagcaaaattggaatgttcccaatggtagaattagaatacctcttttgatgcatcagtaaggttgnn |
218 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
8480255 |
tagtatcgttataaatattttatttaaatgctacagcaaaattggaatgtttccaatggtagaattagcatacctcttttgatgcataagtaaggttg-- |
8480352 |
T |
|
| Q |
219 |
nnnnncttctgtagctattatctccaccatcaaagaacattaactaatttccaaccaaaggagggcaagaataagtactttaactcaccacaattatcca |
318 |
Q |
| |
|
| || | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8480353 |
---------------ttttttttccaccatcaaagaacatttactaatttccaaccaaaggagggcaagaataagtactttaactcaccacaattatcca |
8480437 |
T |
|
| Q |
319 |
caaccaaatttgtcaatttgcaaaaggaatgttgattgtcaccccaaactttgttccaattta---atgagctcaaggtaatgatatccaaattaggaaa |
415 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||| |
|
|
| T |
8480438 |
caacgaaatttgtcaatttgcaaaaggaatgttgattgtcaccccaaactttgttccaatttaatgatgagctcaaggtaaggatatccaaattatgaaa |
8480537 |
T |
|
| Q |
416 |
tgcaaccaacatagaaccagaaggtgatttgctgctattgttgttgttcctatgc |
470 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8480538 |
tgcaaccaacatagaatcagagggtgatttgctgctattgttgttgttcctatgc |
8480592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 8e-93; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 20 - 269
Target Start/End: Original strand, 19344809 - 19345057
Alignment:
| Q |
20 |
ggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaatttggagagtcgaacctatgattgcaaatttataaactcataaataac |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
19344809 |
ggtgccatattgtcttcaagttctccatgtcattcaatatgatttcctctaatttggagaatcgaacctatgattgaaaatttatgaactcataaataac |
19344908 |
T |
|
| Q |
120 |
tagtatcgttataaatatttatttaaatgctagagcaaaattggaatgttcccaatggtagaattagaatacctcttttgatgcatcagtaaggttgnnn |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| || ||| |||||||||||||||||||||||||||| |
|
|
| T |
19344909 |
tagtatcgttataaatatttatttaaatgctagtgcaaaattggaatattcctaatggta-aagtagcatacctcttttgatgcatcagtaaggtttttt |
19345007 |
T |
|
| Q |
220 |
nnnncttctgtagctattatctccaccatcaaagaacattaactaatttc |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19345008 |
tttttttctgtagctattatctccaccatcaaagaacatttactaatttc |
19345057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 278 - 431
Target Start/End: Original strand, 19345091 - 19345244
Alignment:
| Q |
278 |
ggagggcaagaataagtactttaactcaccacaattatccacaaccaaatttgtcaatttgcaaaaggaatgttgattgtcaccccaaactttgttccaa |
377 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || || |
|
|
| T |
19345091 |
ggaggacaagaataagtactttaactcaccacaattatccacaaccaaatttgtcaatttgtaaaaggaatgttgattgtcaccccaaactttgctcaaa |
19345190 |
T |
|
| Q |
378 |
tttaatgagctcaaggtaatgatatccaaattaggaaatgcaaccaacatagaa |
431 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||| ||||||| |||||||| |
|
|
| T |
19345191 |
tttaatgagctcaaggtaagggtatccaaattaggaagtgcaacctacatagaa |
19345244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 13420948 - 13420896
Alignment:
| Q |
22 |
tgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt |
74 |
Q |
| |
|
||||||||||| |||||||| ||||| || ||||||||||||| ||||||||| |
|
|
| T |
13420948 |
tgccatattgtcttcaagttgtccatatccttcaatatgattttctctaattt |
13420896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 13543446 - 13543394
Alignment:
| Q |
22 |
tgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt |
74 |
Q |
| |
|
||||||||||| |||||||| ||||| || ||||||||||||| ||||||||| |
|
|
| T |
13543446 |
tgccatattgtcttcaagttgtccatatccttcaatatgattttctctaattt |
13543394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 16497158 - 16497209
Alignment:
| Q |
24 |
ccatattgttttcaagttctccatgtcattcaatatgatttcctctaatttg |
75 |
Q |
| |
|
||||||||| |||||||| |||||||| ||||||||||||| ||| |||||| |
|
|
| T |
16497158 |
ccatattgtcttcaagttgtccatgtccttcaatatgattttctccaatttg |
16497209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 13670606 - 13670554
Alignment:
| Q |
22 |
tgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt |
74 |
Q |
| |
|
||||||||||| |||||| | ||||| || ||||||||||||| ||||||||| |
|
|
| T |
13670606 |
tgccatattgtcttcaagctgtccatatccttcaatatgattttctctaattt |
13670554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 15899210 - 15899262
Alignment:
| Q |
22 |
tgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt |
74 |
Q |
| |
|
||||||| ||| |||||||| ||||| || ||||||||||||| ||||||||| |
|
|
| T |
15899210 |
tgccatactgtcttcaagttgtccatatccttcaatatgattttctctaattt |
15899262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 20477574 - 20477522
Alignment:
| Q |
22 |
tgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt |
74 |
Q |
| |
|
||||||||||| |||||| | ||||| || ||||||||||||| ||||||||| |
|
|
| T |
20477574 |
tgccatattgtcttcaagctgtccatatccttcaatatgattttctctaattt |
20477522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 7835 - 7887
Alignment:
| Q |
22 |
tgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt |
74 |
Q |
| |
|
||||||||||| |||||||| ||||| || |||| |||||||| ||||||||| |
|
|
| T |
7835 |
tgccatattgtcttcaagttgtccatatccttcagtatgattttctctaattt |
7887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 26600 - 26548
Alignment:
| Q |
22 |
tgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt |
74 |
Q |
| |
|
||||||||||| |||||| | ||||| || ||||||||||||| ||||||||| |
|
|
| T |
26600 |
tgccatattgtcttcaagctgtccatatccttcaatatgattttctctaattt |
26548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 115820 - 115768
Alignment:
| Q |
22 |
tgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt |
74 |
Q |
| |
|
||||||||||| |||||| | ||||| || ||||||||||||| ||||||||| |
|
|
| T |
115820 |
tgccatattgtcttcaagctgtccatatccttcaatatgattttctctaattt |
115768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 168220 - 168168
Alignment:
| Q |
22 |
tgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt |
74 |
Q |
| |
|
||||||||||| |||||| | ||||| || ||||||||||||| ||||||||| |
|
|
| T |
168220 |
tgccatattgtcttcaagctgtccatatccttcaatatgattttctctaattt |
168168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 38057855 - 38057907
Alignment:
| Q |
22 |
tgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt |
74 |
Q |
| |
|
||||||||||| |||||||| ||||| || ||||||||||||| |||||||| |
|
|
| T |
38057855 |
tgccatattgtcttcaagttgtccatatccttcaatatgattttttctaattt |
38057907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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