View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11242_low_7 (Length: 472)
Name: NF11242_low_7
Description: NF11242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11242_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 34093068 - 34092597
Alignment:
| Q |
1 |
tgagatggacatcatcacatatacctaacctaatgcctcttcttcatttttctagctaccaatgtctttttcatctttgaattaatatatgctctaatag |
100 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34093068 |
tgaggtggacatcatcacatttacctaacctaatgcctcttcttcatttttctagctaccaatgtctttttcatctttgaattaatatatgctctaatag |
34092969 |
T |
|
| Q |
101 |
ccaacgataatgatttgcatacaatgtaattgtttcttttatttcaagtggttgtgtatatataatgtgagatttgtttagccaattattcaatatcaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34092968 |
ccaacgataatgatttgcatacaatgtaattgtttcttttatttcaagtggttgtgtatatataatgtgagatttgttttgccaattattcaatatcaat |
34092869 |
T |
|
| Q |
201 |
ctgactttggcaaagtttctcattgagaaaagtcctaatcatgtatttnnnnnnnnnnnnnnnnnnngtttatgaagagttatatctctttctttttatt |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34092868 |
ctgactttggcaaagtttcttattgagaaaagtcctaatcatgtatttaaaaactaaaaataaaaaagtttatgaagagttatatctctttctttttatt |
34092769 |
T |
|
| Q |
301 |
tttgtttgcagacaaaatgataatggtgatccaaataatacgaaacgttgaagtttcatgttcgaacccatgaataaagatgattaacctatcaatatta |
400 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
34092768 |
tttgtttgcagacgaaatgattatggtgatccaaataatacgaaacgttgaagtttcatgttcgaacctatgaataaaggtgattaacctatcaatatta |
34092669 |
T |
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| Q |
401 |
ttattgaaatttgaattaggatgaactataaaatatctcactttataaatcagttttttaacgagcaattat |
472 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34092668 |
ttattgaaatttgaattaggacgaactataaaatatctcactttataaatcagttttttaacgagcaattat |
34092597 |
T |
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