View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11242_low_8 (Length: 401)
Name: NF11242_low_8
Description: NF11242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11242_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 211 - 392
Target Start/End: Original strand, 47500386 - 47500567
Alignment:
| Q |
211 |
gtatttaagtcaagaattgatgagatgaaattataccagccagaatggtccatccttttccatacatatatattaatgtaataattaatattattgaaat |
310 |
Q |
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| T |
47500386 |
gtatttaagtcaagaattgatgagatgaaattataccagccagaatggtccatccttttccatacatatatattcatgtaataattaatattattgaaat |
47500485 |
T |
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| Q |
311 |
ttgtctaagttttttgtccatgtcagtgggggctttagttcactcaactccaaaacttaattatataactcatcctctctgc |
392 |
Q |
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| T |
47500486 |
ttgtctaagttttttgtccatgtcagtgggggctttagttcactcaactccaaaacttaattatataactcatcctctctgc |
47500567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 47500200 - 47500361
Alignment:
| Q |
18 |
ttgatgaacttcaatggtgatctttcaccaaaacacttattcattgaccttgttatattgacatcatgtgttcttaatattttattgatcccttaattta |
117 |
Q |
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| T |
47500200 |
ttgatgaacttcaatggtgatctttcaccaaaacactgattcattgaccttgttatattgacatcatgtgttcttaatattttattgatcccttaattca |
47500299 |
T |
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| Q |
118 |
gggaaccaatataaaactcgtaattttactagttagttcattattcaacatacacaatacat |
179 |
Q |
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| T |
47500300 |
gggaaccaatataaaactcgtaattttactagttagttcattattcaacatacacaatacat |
47500361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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