View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11242_low_9 (Length: 386)
Name: NF11242_low_9
Description: NF11242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11242_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 7 - 383
Target Start/End: Complemental strand, 26210354 - 26209978
Alignment:
| Q |
7 |
ggagcagagaggttagtagtttttacaactaatcatagggatagtgttgatcctgcattagttaggtgtggacgcatggacgtgcacgtgagtttaagca |
106 |
Q |
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| T |
26210354 |
ggagaagagaggttagtagtttttacaactaatcatagggatagtgttgatcctgcattagttaggtgtggacgcatggacgtgcacgtgagtttaagca |
26210255 |
T |
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| Q |
107 |
cgtgtggggtccatgcgtttagggagttggcaaagaattaccttgggctggagtcacacgtgatgtttgaggcaatcgaagggtgtattcgttcgggtgg |
206 |
Q |
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| T |
26210254 |
cgtgtggggtccatgcgtttagggagttggcaaagaattaccttgggctggagtcacacgtgatgtttgaggcaatcgaagggtgtattcgttcgggtgg |
26210155 |
T |
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| Q |
207 |
gtcccttacaccggcgcatgtgggggagattttgttgaggaataggagggatgttgatgtggcaatgagggaggttttgtctcttatgcaaggcagggtg |
306 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26210154 |
gtcccttacaccggcacatgtgggggagattttgttgaggaataggagggatgttgatgtggcaatgagggaggttttgtctcttatgcaaggcagggtg |
26210055 |
T |
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| Q |
307 |
gttgttgttacatctgctgctgatcaaacggataatgaggagttggcaatgatcggagtgagatcaccagagagtgt |
383 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26210054 |
gttgttgttacatctgctgctgatcagacagataatgaggagttggcaatgatcggagtgaggtcaccagagagtgt |
26209978 |
T |
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