View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11243_high_10 (Length: 251)
Name: NF11243_high_10
Description: NF11243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11243_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 4286711 - 4286927
Alignment:
| Q |
18 |
acatcaaaaaatcataaatttgactacatgcaataaactagcacttggtaactactccccagtaatgtatgaacagaattttgagaggaggaaacaataa |
117 |
Q |
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| T |
4286711 |
acataaaaaaatcataaatttgactacatgcaataaactagcacttggcaactactccccagtaatgtatgaacagaattttgagaggaggaaacaataa |
4286810 |
T |
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| Q |
118 |
taacacacaggttttcattcaagattagattgttttatttagtcaagataatcaatgtttctttttatgcttaggaatgaaagcacgctatcaatattag |
217 |
Q |
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| T |
4286811 |
taacacacaggttttcattcaagattagattgttttatttagtcaagataatcaatgtttctttttatgcttaggaatgaaagcacgctatcaatattag |
4286910 |
T |
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| Q |
218 |
aactagtaaacacattt |
234 |
Q |
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| T |
4286911 |
aactagtaaacacattt |
4286927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 19972170 - 19972224
Alignment:
| Q |
171 |
aatgtttctttttatgcttaggaatgaaagcacgctatcaatattagaactagta |
225 |
Q |
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| T |
19972170 |
aatgtttctttttatgcttgggaatgaagtgatgctatcaatattagagctagta |
19972224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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