View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11243_high_3 (Length: 444)
Name: NF11243_high_3
Description: NF11243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11243_high_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Original strand, 4286312 - 4286734
Alignment:
| Q |
18 |
catcatggcataaccttagcnnnnnnnnntcacataaaagtagaggtctgttcaattttcactgggcataacagtaccatgttctacaagttcgatagag |
117 |
Q |
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| T |
4286312 |
catcatggcataaccttagcaaaaaagaatcacataaacgtagaggtctgttcaattttcaccgggcataacagtaccatgttctactagttcgatagag |
4286411 |
T |
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| Q |
118 |
gtctcatctgcaagcaaatacataagttacaatcactcaccaccaagttattatattgaagattgaaccaaggacataagactgatattatctaagaaat |
217 |
Q |
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| T |
4286412 |
gtctcatctgcaagcaaatacataagttacaatcactcaccaccaagttattatattgaagattgaaccaaagacataagactgatattatctaagaaat |
4286511 |
T |
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| Q |
218 |
ctacttgcctacttggtgtgtcacaagaacaatgttcatgcattgctatataaaaggtctcaaaacataaaactggtttaataaacagcaacatttattt |
317 |
Q |
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| T |
4286512 |
ctacttgcctacttggtgtgtcacaagaacaatgttcatgcattgctatataaaaggtctcaaaacataaaactggtttaataaacagcaacatttattt |
4286611 |
T |
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| Q |
318 |
atgaccacctgtttgatcatgacatacaattaattcatcagtccaccccaaagcacttgagaaggagttgatccaaacaaactgaattctacgtcaattc |
417 |
Q |
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| T |
4286612 |
atgaccacctgtttgatcatgacatac----aattcatcagtccaccccaaagcacttgagaaggagttgatccaaacaaactgaattctacgtcaattt |
4286707 |
T |
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| Q |
418 |
gaaacatcaaaaaatcataaatttgac |
444 |
Q |
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| T |
4286708 |
gaaacataaaaaaatcataaatttgac |
4286734 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 259
Target Start/End: Original strand, 17165434 - 17165498
Alignment:
| Q |
195 |
aagactgatattatctaagaaatctacttgcctacttggtgtgtcacaagaacaatgttcatgca |
259 |
Q |
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| T |
17165434 |
aagattgacattatcaaggaaatctacttaactaattagtgtgttacaagaacaatgttcatgca |
17165498 |
T |
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