View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11243_high_5 (Length: 395)
Name: NF11243_high_5
Description: NF11243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11243_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 36 - 385
Target Start/End: Original strand, 35132747 - 35133096
Alignment:
| Q |
36 |
catacatcttgttttagcagcaataaaaaagacccaaaaacaaagatgaatgaaaatgcaggaagagtacaatgaaactaacagagggatgattgaagaa |
135 |
Q |
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| T |
35132747 |
catacatcttgttttagcagcagtaaaaaagacccaaaaacaaagatgaatgaaaatgcaggaacagtacaatgaaactaacagagggatgattgaagaa |
35132846 |
T |
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| Q |
136 |
agcacaaggacttacagtaagaatatttggatgacgcaacctcagaagcaaagcaacttcagaagtaaattgcttctcaagaaaagaagccaaatcttca |
235 |
Q |
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| T |
35132847 |
agcacaaggacttacagtaagaatatttggatgacgcaacctcagaagcaaagcaacttcagaagtaaattgcttctcaagaaaagaagccaaatcttca |
35132946 |
T |
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| Q |
236 |
tcttcttcaggctgactcacaagcttaattgcaacatccttttgcttgtaaacacctctatagattctactgtgtctaccagaagcaaatttagatccaa |
335 |
Q |
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| T |
35132947 |
tcttcttcaggctgactcacaagcttaattgcaacatccttttgcttgtaaacacctctatagattctactgtgtctaccagaagcaaatttagatccaa |
35133046 |
T |
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| Q |
336 |
tgagcaactgagacatatctgcactccattcttcttcaccttctcctttg |
385 |
Q |
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| T |
35133047 |
tgagcaactgagacatatctgcactccattcttcttcaccttctcctttg |
35133096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 182 - 363
Target Start/End: Original strand, 43933314 - 43933495
Alignment:
| Q |
182 |
agcaaagcaacttcagaagtaaattgcttctcaagaaaagaagccaaatcttcatcttcttcaggctgactcacaagcttaattgcaacatccttttgct |
281 |
Q |
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||||||||||| ||||||||||| || |||||||| |||| |||||| || ||||| ||||| || ||||| ||||||||||| ||||||||| | | || |
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| T |
43933314 |
agcaaagcaacctcagaagtaaagtgtttctcaagcaaagcagccaattcctcatcctcttctggttgactaacaagcttaatagcaacatccatgttct |
43933413 |
T |
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| Q |
282 |
tgtaaacacctctatagattctactgtgtctaccagaagcaaatttagatccaatgagcaactgagacatatctgcactcca |
363 |
Q |
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| || | |||||| ||||| || || ||||| |||||| ||||||| | ||||||| |||||||||||||| ||| |||| |
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| T |
43933414 |
tatagatacctctgtagatcctgctatgtctcccagaatcaaatttggcaccaatgaataactgagacatatcagcattcca |
43933495 |
T |
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