View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11243_high_6 (Length: 378)
Name: NF11243_high_6
Description: NF11243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11243_high_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 22 - 378
Target Start/End: Original strand, 4286382 - 4286734
Alignment:
| Q |
22 |
acagtaccatgttctacaagttcgatagaggtctcatctgcaagcaaatacataagttacaatcactcaccaccaagttattatattgaagattgaacca |
121 |
Q |
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| T |
4286382 |
acagtaccatgttctactagttcgatagaggtctcatctgcaagcaaatacataagttacaatcactcaccaccaagttattatattgaagattgaacca |
4286481 |
T |
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| Q |
122 |
aggacataagactgatattatctaagaaatctacttgcctacttggtgtgtcacaagaacaatgttcatgcattgctatataaaaggtctcaaaacataa |
221 |
Q |
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| T |
4286482 |
aagacataagactgatattatctaagaaatctacttgcctacttggtgtgtcacaagaacaatgttcatgcattgctatataaaaggtctcaaaacataa |
4286581 |
T |
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| Q |
222 |
aactggtttaataaacagcaacatttatttatgaccacctgtttgatcatgacatacaattaattcatcagtccaccccaaagcacttgagaaggagttg |
321 |
Q |
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| T |
4286582 |
aactggtttaataaacagcaacatttatttatgaccacctgtttgatcatgacatac----aattcatcagtccaccccaaagcacttgagaaggagttg |
4286677 |
T |
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| Q |
322 |
atccaaacaaactgaattctacgtcaattcgaaacatcaaaaaatcataaatttgac |
378 |
Q |
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| T |
4286678 |
atccaaacaaactgaattctacgtcaatttgaaacataaaaaaatcataaatttgac |
4286734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 17165434 - 17165498
Alignment:
| Q |
129 |
aagactgatattatctaagaaatctacttgcctacttggtgtgtcacaagaacaatgttcatgca |
193 |
Q |
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| T |
17165434 |
aagattgacattatcaaggaaatctacttaactaattagtgtgttacaagaacaatgttcatgca |
17165498 |
T |
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