View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11243_high_9 (Length: 270)
Name: NF11243_high_9
Description: NF11243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11243_high_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 270
Target Start/End: Original strand, 4286484 - 4286734
Alignment:
| Q |
16 |
gacatcagactgatattatctaagaaatctacttgcctacttggtgtgtcacaagaacaatgttcatgcattgctatataaaaggtctcaaaacataaaa |
115 |
Q |
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| T |
4286484 |
gacataagactgatattatctaagaaatctacttgcctacttggtgtgtcacaagaacaatgttcatgcattgctatataaaaggtctcaaaacataaaa |
4286583 |
T |
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| Q |
116 |
ctggtttaataaacagcaacatttatttatgaccacctgtttgatcatgacatacaattaattcatcagtccaccccaaagcacttgagaaggagttgat |
215 |
Q |
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| T |
4286584 |
ctggtttaataaacagcaacatttatttatgaccacctgtttgatcatgacatac----aattcatcagtccaccccaaagcacttgagaaggagttgat |
4286679 |
T |
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| Q |
216 |
ccaaacaaactgaattctacgtcaattcgaaacatcaaaaaatcataaatttgac |
270 |
Q |
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| T |
4286680 |
ccaaacaaactgaattctacgtcaatttgaaacataaaaaaatcataaatttgac |
4286734 |
T |
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